BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928580
Length=301
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03900.1 | Symbols: ATNAP4, NAP4 | non-intrinsic ABC protein... 124 4e-28
AT1G73430.1 | Symbols: | sec34-like family protein | chr1:2760... 124 4e-28
> AT1G03900.1 | Symbols: ATNAP4, NAP4 | non-intrinsic ABC protein
4 | chr1:991139-993118 FORWARD LENGTH=1198
Length=1198
Score = 124 bits (67), Expect = 4e-28
Identities = 80/86 (93%), Gaps = 1/86 (1%)
Strand=Plus/Plus
Query 149 CTGCTGGAATAACTAGGTCTCC-TTACCGCCTCCTCCAAACGATCCTGTCGCTTCAAGGA 207
|||| ||| |||| |||||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 733 CTGCCGGAGTAACCAGGTCTCCTTTACCTCCTCCTCCAAACGATCCCGTCGCTTCAAGGA 792
Query 208 TTGCATCTGATGGCTGCAAGGAATCA 233
||||||||||||||||||||||||||
Sbjct 793 TTGCATCTGATGGCTGCAAGGAATCA 818
> AT1G73430.1 | Symbols: | sec34-like family protein | chr1:27603655-27611068
FORWARD LENGTH=3035
Length=3035
Score = 124 bits (67), Expect = 4e-28
Identities = 69/70 (99%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 79 CGATTTTAGCAAAAATGAAACTCTATTTGCAAAACCCATCAACAAGGACCATACTTTTCA 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2597 CGATTTTAGCAAAAATGAAACTCTATTTGCAAAACCCATCAACAAGGACCATACTTTTCA 2656
Query 139 AGACGATCAA 148
|| |||||||
Sbjct 2657 AGCCGATCAA 2666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13924166473
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5