BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928581
Length=1289
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09180.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Mediator ... 2185 0.0
> AT3G09180.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Mediator
complex subunit Med27 (InterPro:IPR021627); Has 112 Blast
hits to 112 proteins in 38 species: Archae - 0; Bacteria - 0;
Metazoa - 79; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes
- 10 (source: NCBI BLink). | chr3:2819118-2821425
FORWARD LENGTH=1698
Length=1698
Score = 2185 bits (1183), Expect = 0.0
Identities = 1252/1286 (97%), Gaps = 2/1286 (0%)
Strand=Plus/Plus
Query 1 CGTCGTCGTCAAGAAGATCAATTACATTGAAATCGAAAGAGAGTGCTTGAATCACAGCTT 60
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 101 CGTCGTCGTCAAGAAGATCAATTTCATTGAAATCGAAAGAGTGTGCTTGAATCACAGCTT 160
Query 61 ATGCAGACGCTACACCAGTCCCAACTTCTCCATAATTCGGCCGAGGCGGCGAACAATCAG 120
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 161 ATGCAGACGCTACACCAGTCCCAACTTCTCCAGAATCCGGCCGAGGCGGCGAACAATCAG 220
Query 121 TCGGAATCTGACGCGCCGCCGAAACAGGTGGCTCAGGCCATGGAACGACTCAATCAAGCG 180
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 TCTGAATCGGACGCGCCGCCGAAACAGGTGGCTCAGGCCATGGAACGACTCAATCAAGCG 280
Query 181 GCTAGGGTTATCGCCGATATCCGCCTCGGCGCTGACCGTATCCTTGAAGCTATGTTCGTG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 GCTAGGGTTATCGCCGATATCCGCCTCGGCGCTGACCGTATCCTTGAAGCTATGTTCGTG 340
Query 241 GCTTCGCAACCTCGTCACACAGACATGCCTCTTCAGCTCTTTCTCAGAGAAGACGCCTCC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 GCTTCGCAACCTCGTCACACAGACATGCCTCTTCAGCTCTTTCTCAGAGAAGACGCCTCC 400
Query 301 ATGCGTCAACATCTTCAGGATCTTCGCTTAATCGGGAAGAAATTGGAAGAATCTGGAGTG 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 401 ATGCGTCAACATCTTCAGGATCTTCGCTTAATAGGGAAGAAATTGGAAGAATCTGGAGTG 460
Query 361 TTAACTGAATCACTTAGGTCAAGAAGTAACTCATGGGGTCTTCACATGCCTTTGGTTTGT 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 461 TTAACTGAATCACTTAGGTCAAGAAGTAACTCTTGGGGTCTTCACATGCCTTTGGTTTGT 520
Query 421 CCAGATGGTGCTGTCGTTGCTTATGCTTGGAAAAGACAGCTTGCTGGCCAAGCTGGTGCC 480
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 CCAGATGGTGCAGTCGTTGCTTATGCTTGGAAAAGACAGCTTGCTGGCCAAGCTGGTGCT 580
Query 481 TCTGCTGTTGACAGAACCAGGTTAGCTCTCAAGGCCTTCACAGATCAGAAAAGACGATTC 540
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 581 TCTGCTGTTGATAGAACCAGGTTAGCTCTCAAGGCCTTCACGGATCAGAAAAGACGATTC 640
Query 541 TTCCCTCACATTGATGATGGATTAAAGATGGAACCAAGCTCaaaaaaaCATCGTGCCTCC 600
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 TTCCCTCATATTGATGATGGATTAAAGATGGAACCAAGCTCAAAAAAACATCGTGCCTCC 700
Query 601 CATTTGCTAATAGAAAATGGAAGAGAGGAGCCGGTTGATTACAAAACATTACCAGATATA 660
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 701 CATTTGCTATTAGAAAATGGAAGAGAGGAGCCGGTTGATTACAAAACATTGCCAGATATA 760
Query 661 CAATCGCGTTTAGAGAAGCTGGTCCCCAATGTGAAGGTCTCTACTTATGGACGATTGAAC 720
||||||||||||||||||||||| || | ||||||||| |||||||||||||||||||||
Sbjct 761 CAATCGCGTTTAGAGAAGCTGGTTCCGAGTGTGAAGGTGTCTACTTATGGACGATTGAAC 820
Query 721 TGGCTTAAAAGAGCTAACTCTTTACCTGGGTCAGGTAGTGATGATCCAACAGAAGCATCG 780
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 821 TGGCTTAAAAGAGCTAACTCTTTACCTGGGTCAGGTAGTGATGATCCTACAGAAGCATCG 880
Query 781 AAACCTATTTTCCAGAGTTCTAGTAAGCTGAGATCAGGGTTACAGACTGAAGTTGTCGAT 840
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 881 AAACCTATTTTCCAGAGTTCTAGCAAGCTGAGATCAGGGTTACAGACTGAAGTTGTCGAC 940
Query 841 AAGATTGCTGTTATTGAGTTATCATTTCCTTCAT-TATTCAGAGCTATAGTCTCGTTGAA 899
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 941 AAGATTGCTGTTATTGAGTTATCATTTCCTTC-TCTATTCAGAGCTATAGTCTCGTTGAG 999
Query 900 TCCAGCGGGTTCTGTTGATCCAGATGCAGTTGCTTTCTTCTCCCCAGATGAGGGAGGCAG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 TCCAGCGGGTTCTGTTGATCCAGATGCAGTTGCTTTCTTCTCCCCAGATGAGGGAGGCAG 1059
Query 960 CTACTTACATGCGCGAGGCTTCTCGGTTTATCACGTTTACAAACACATGACGGAACATGC 1019
||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1060 CTACTTACATGCGAGAGGCTTCTCGGTTTATCATGTTTACAAACACATAACGGAACATGC 1119
Query 1020 TGCTACGGCCTTGCAATATTTCCTCGGCTTTGGTACTGGAACAGCTCTCTACTCTCTTCT 1079
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 TGCTACAGCCTTGCAATATTTCCTCGGCTTTGGTACTGGAACAGCTCTCTACTCTCTTCT 1179
Query 1080 GCTATGGATATGCAGTTTTGAATCCCTATTTAGCAAACCTTGCACTAAATGTGGAAGGCT 1139
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1180 GCTATGGATATGCAGTTTTGAATCCGTATTTAGCAAACCTTGCACTAAATGTGGAAGGCT 1239
Query 1140 ATTAGCAATGGATAAAAAGTCTGCGCTAATCTTACCTCCTTTACACCGCGCTTACCAAGA 1199
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1240 ATTAGCAATGGATAAAAAGTCTGCGTTAATCTTACCTCCTTTACACCGCGCTTACCAAGA 1299
Query 1200 ATTGCCTCTTGCATTAAACCTGGACGTTTGTGAAGCTTACCACTCCAGTTGCTCTCAAGA 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 ATTGCCTCTTGCATTAAACCTGGACGTTTGTGAAGCTTACCACTCCAGTTGCTCTCAAGA 1359
Query 1260 TGATACGTAGTACTCCAGTAATTAGG 1285
|||||| |||||||| ||| ||||||
Sbjct 1360 TGATACCTAGTACTCTAGTGATTAGG 1385
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63403288335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5