BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928584
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09210.1 | Symbols: PTAC13 | plastid transcriptionally activ... 1664 0.0
> AT3G09210.1 | Symbols: PTAC13 | plastid transcriptionally active
13 | chr3:2825279-2826880 REVERSE LENGTH=1175
Length=1175
Score = 1664 bits (901), Expect = 0.0
Identities = 1001/1047 (96%), Gaps = 15/1047 (1%)
Strand=Plus/Plus
Query 1 TTTTCCCAAAA-TAAAACAGAGAATGATGAAGCTGCAAGGGGGACTTCTCCAATGGAGTC 59
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 8 TTTTCCCAAAAGAAAAACAGAGAATGATGAAGCTGCAAGGGGGACTTCTCCAGTGGAGTC 67
Query 60 GTAGCAGCTTAATCCCGTCGATTTACT-CACCAATCAACAAAACTCAATTCTCTATCTCC 118
||||||||||||||||||||||||| | | |||||||||||||| |||||||||||| ||
Sbjct 68 GTAGCAGCTTAATCCCGTCGATTTA-TACGCCAATCAACAAAACCCAATTCTCTATCGCC 126
Query 119 GCCTGTGTTATCGAGCGGAACCACCAGCTTACGGCGAAGGAGAGACGGCAGCTCCGGAAC 178
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 GCCTGTGTCATCGAGCGGAACCACCAGCTTACGGCGAAGGAGAGACGGCAGCTCCGGAAC 186
Query 179 GAGCGGCGGGAGAGTAAATCGGGGTATAGCTGGCGAGAAGAAGTTGAAGAAAAGTTGATT 238
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 187 GAGCGGCGGGAGAGTAAATTGGGGTATAGCTGGCGAGAAGAAGTTGAAGAAAAGTTGATT 246
Query 239 AAGAAACCAAAGAAACGGTATGCGACGTGGACGGAGGAGCTGAATTTGGATACTTTGGCT 298
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 247 AAGAAACCAAAAAAACGGTATGCAACGTGGACGGAGGAGCTGAATTTGGATACTTTGGCT 306
Query 299 GAGTCCGGTCCGCAATGGTGGGTGGTTAGGGTTTCGAGACTTCGTGGTCATGAGACTGCT 358
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 307 GAGTCGGGTCCGCAATGGTGGGCGGTTAGGGTTTCGAGACTTCGTGGTCATGAGACTGCT 366
Query 359 CAAATCTTAGCTCGAGCTCTGGCTCGTCAATTCCCTGAAATGGAATTCACGGTTTATGCT 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 CAAATCTTAGCTCGAGCTCTGGCTCGTCAATTCCCTGAAATGGAATTCACGGTTTATGCA 426
Query 419 CCATCTGTTCAAGTGAAGAGAAAGCTAAAGAACGGTTCTATATCTGTTAAACCGAAACCA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 CCATCTGTTCAAGTGAAGAGAAAGCTAAAGAACGGTTCTATATCTGTTAAACCGAAACCA 486
Query 479 GTGTTCCCTGGTTGCATTTTCATCAGATGTATATTGAACAAAGAGATACATGACTCCATA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 GTGTTCCCTGGTTGCATTTTCATCAGATGTATATTGAACAAAGAGATACATGACTCCATA 546
Query 539 AGAGAAGTTGATGGAGTCGGAGGTTTCATAGGTTCAAAAGTTGGAAATACCAAGAGACAG 598
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 AGAGACGTTGATGGAGTCGGAGGTTTCATAGGTTCAAAAGTTGGAAATACCAAGAGACAG 606
Query 599 ATTAATAAACCAAGACCTGTAGACGACAGTGACTTGGAAGCTATTTTCAAACAAGCAAAA 658
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 607 ATTAATAAACCAAGACCAGTAGATGACAGTGACTTGGAAGCTATTTTCAAACAAGCAAAA 666
Query 659 GAAGCGCAAGAGAAAGCAGACAGTGAGTTCGAAGAGGCACAAAGTGCTGAAGAAGAAGAA 718
|||||||||||||||||||| |||||||||||||||||| | || |||||||||||||
Sbjct 667 GAAGCGCAAGAGAAAGCAGATAGTGAGTTCGAAGAGGCAGATAGAGCTGAAGAAGAAG-- 724
Query 719 GCGAGTTTACTAGTATCACAGCAACTTCTCGCATCATCTAATTCAGACGTTATTGAGTCT 778
||||| |||||| |||||| |||||||||||| |||||||||||| ||||||||| ||
Sbjct 725 -CGAGTATACTAGCGTCACAGGAACTTCTCGCATTATCTAATTCAGATGTTATTGAGACT 783
Query 779 GTAGCAGAATCTAAACCGAAACGAGCCCCGAGAAAAGCTACACTTGCTACTGAAACAAAA 838
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 GTAGCAGAATCTAAACCGAAACGAGCCCCGAGAAAAGCTACACTTGCTACTGAAACAAA- 842
Query 839 GATTCAAAGGCGAAGAAGAAGAAACTTGCAGCGGGTTCTACAGTTCGAGTGTTATCAGGG 898
| | ||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 843 G-------G-CGAAGAAGAAGAAACTTGCAGCGGGTTCTACAGTTAGAGTTTTATCAGGG 894
Query 899 ACATTCGCTGAATTTGTCGGCAACCTAAAGAAACTAAACCGCAAAACTGCAAAGGCAACG 958
||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 895 ACATTTGCTGAATTTGTTGGGAACCTAAAGAAACTAAACCGCAAAACTGCAAAGGCAACG 954
Query 959 GTGGGATTTACTTTGTTTGGGAAGGAGACACTAGTGGAAATTGACATCAATGAACTTGTT 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 GTGGGATTTACTTTGTTTGGGAAGGAGACACTAGTGGAAATTGACATCAATGAACTTGTT 1014
Query 1019 CCTGAGATTCAATCTTAAATAGTTTGT 1045
|||||||||||||||||||||||||||
Sbjct 1015 CCTGAGATTCAATCTTAAATAGTTTGT 1041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51791405557
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5