BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928586
Length=1207
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09230.1 | Symbols: AtMYB1, MYB1 | myb domain protein 1 | ch... 1677 0.0
> AT3G09230.1 | Symbols: AtMYB1, MYB1 | myb domain protein 1 |
chr3:2833398-2835338 FORWARD LENGTH=1448
Length=1448
Score = 1677 bits (908), Expect = 0.0
Identities = 1134/1237 (92%), Gaps = 39/1237 (3%)
Strand=Plus/Plus
Query 1 gagagagagagagagaAGGGAAGCTTATGGATGCAGAGATCGTGAGACGATCGGAGACAA 60
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 37 GAGAGAGAGAGAGAGAAGGGAAGCTTATGGAGGCAGAGATCGTGAGACGATCGGAGGTAA 96
Query 61 CGGGATTAATAAGGGAGCTGGAAGAATCGGCGGAGGTGTCAGGCGACAGAGGAGATTGCG 120
||||||||| ||||||| ||||||||||| | | | | | | |||||||||||||
Sbjct 97 CGGGATTAAGAAGGGAGGTGGAAGAATCGTC--A-AT-T---G-G-TAGAGGAGATTGCG 147
Query 121 ATGGTGATGGCGGCGATGT-GG-G-AGA------A---------GGGACGAGCGGGAGAG 162
||||||||||||||||||| || | ||| | ||||||||||||||||
Sbjct 148 ATGGTGATGGCGGCGATGTGGGAGAAGATGCGGCAGGGTTCGTTGGGACGAGCGGGAGAG 207
Query 163 GAGGAAGAGAGCGAGTTAAGGGGCCGTGGTCGCCGGAGGAGGATGGTGTGTTGAGTGAGC 222
|| ||||||| |||||||| |||||||||||| ||||||||||| ||||||||||||||
Sbjct 208 GAAGAAGAGATCGAGTTAAAGGGCCGTGGTCGAAGGAGGAGGATGATGTGTTGAGTGAGC 267
Query 223 TCGTTAAGAAGTTTGGAGCGAGGAATTGGAGTTTGATCGCTCGGAGTATTCCTGGTCGTT 282
||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 268 TCGTTAAGAGGTTGGGAGCGAGGAATTGGAGTTTTATCGCTCGGAGTATTCCTGGTCGTT 327
Query 283 CAGGCAAGTCTTGTCGTCTTCGTTGGTGTAATCAGCTCAATCCAAATCTTATACGCAATT 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 CAGGCAAGTCTTGTCGTCTTCGTTGGTGTAATCAGCTCAATCCAAATCTTATACGCAATT 387
Query 343 CCTTTACTGAGGTAGAGGATCAGGCTATCATCGCAGCACATGCCACCCACGGAAACAAAT 402
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 388 CATTTACTGAGGTAGAGGATCAGGCTATCATCGCAGCACATGCCATCCACGGAAACAAAT 447
Query 403 GGGCTGCAATCGCGAAGCTCCTCCCGGGAAGAACAGATAATGCTATCAAGAACCACTGGA 462
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 448 GGGCTGTTATCGCGAAGCTCCTCCCCGGAAGAACAGATAATGCTATCAAGAACCACTGGA 507
Query 463 ACTCCACTTTAAGACGTCGATTCATGGACTTTGAAAAGGCGAAGAATACAGGAACTGGAA 522
|||| ||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct 508 ACTCTGCTTTAAGACGTCGATTCATAGACTTTGAAAAGGCCAAGAATATAGGAACTGGAA 567
Query 523 GCTTAGTCATGGAAGATTCTGGATTTAACAGAACGACTACAATAGCCTCATCAGAAGAAA 582
|||| ||| |||| |||||||||||| |||||||||| ||| ||||||||||||||||||
Sbjct 568 GCTTGGTCGTGGATGATTCTGGATTTGACAGAACGACAACAGTAGCCTCATCAGAAGAAA 627
Query 583 CTTTATCTTCAGGCGGTGGTGGCCATGTAACTACTCCAATTGTTTCTTCAGAAGGCAAAG 642
|||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||
Sbjct 628 CTTTATCTTCAGGCGGTGGTTGCCATGTAACTACTCCAATTGTATCTCCAGAAGGCAAAG 687
Query 643 AAGCTACC---TCCATGGAAATGTCTGAAGAACAATGCGTAGAGAAAACAATCGAAGAAG 699
|||||||| |||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 688 AAGCTACCACCTCCATGGAAATGTCTGAAGAACAATGCGTAGAGAAAACAAACGGAGAAG 747
Query 700 GTATTTCTAGGCAAGACGGTAATGATCCTCCAACGCTTTCCCGCCCAGTGGCTCAGCTCA 759
|||||||||||||||| | ||| |||||||||||||||| |||||||||| ||| |||||
Sbjct 748 GTATTTCTAGGCAAGATGATAAGGATCCTCCAACGCTTTTCCGCCCAGTGCCTCGGCTCA 807
Query 760 GTTCTTTTAATGCTTGCAATCACATGGAAGGATTATCTTCTCCACATATACAAGACCAAA 819
||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct 808 GTTCTTTTAATGCTTGCAATCACATGGAAGGATCACCCTCTCCACATATACAAGACCAAA 867
Query 820 ATCGGCTCCAATCATCTAAACAAGACGCAGCAATGCTAAGACTGCTTGAAGGAGCTTACA 879
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 868 ATCAGCTCCAATCATCTAAACAAGACGCAGCAATGCTAAGATTGCTTGAAGGAGCTTACA 927
Query 880 GTGAACGGTGTGTGCCTCAAACATGTGGAGGTGGTTGTTGCAGCAACAATCCCG-T---- 934
| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 928 GCGAACGGTTTGTGCCTCAAACATGTGGAGGTGGTTGTTGCAGCAACAATCCCGATGGCA 987
Query 935 -T---CAGCAAGACTCATTGTTGGGTCCAGAGTTTGTGGATTACTTAGACCCACCAACGT 990
| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 988 GTTTTCAGCAAGAATCATTGTTGGGTCCAGAGTTTGTGGATTACTTAGACTCACCAACGT 1047
Query 991 TTCCGAGTTGCGAATTAGCTGCTATAGTAACGGATATAAGCAGCCTCGCTTGGCTGAGAA 1050
||||||||| |||| |||||||||||| |||||| ||| |||||||||||||||||||||
Sbjct 1048 TTCCGAGTTCCGAACTAGCTGCTATAGCAACGGAAATAGGCAGCCTCGCTTGGCTGAGAA 1107
Query 1051 GCGGTTTAGAGAGTAGCAGCGTGAGGGTGATGGAAGAAGCAGCTGGTCGGTTAAGGCCTC 1110
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1108 GCGGTTTAGAGAGTAGCAGCGTGAGGGTGATGGAAGACGCAGTTGGTCGGTTAAGGCCTC 1167
Query 1111 AAGGCTCAAGGGGTCATCGAGATCATTATCTTGTATCTGAACGGGGGAAGAACATAACCA 1170
||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1168 AAGGCTCCAGGGGTCATCGAGATCATTATCTTGTATCTGAACAGGGGACGAACATAACCA 1227
Query 1171 ATGTCCTGTCCACATAAAAACTGGCAGAACAAAAACA 1207
|||||||||||||||||||||||| ||||||||||||
Sbjct 1228 ATGTCCTGTCCACATAAAAACTGGGAGAACAAAAACA 1264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59286843645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5