BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928594
Length=383
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09280.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 510 3e-144
> AT3G09280.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: root; Has
31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr3:2850920-2851258
REVERSE LENGTH=339
Length=339
Score = 510 bits (276), Expect = 3e-144
Identities = 320/341 (94%), Gaps = 4/341 (1%)
Strand=Plus/Plus
Query 23 ATGGATGTGAAACTTATAGTTCTATGCTTCTTGCTAACGTAC-TCCTTGTCCATGGCGGC 81
||||||| ||||| |||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct 1 ATGGATGCGAAACATATAGTTCTATGCTTCTTGCTAACGTACGT-CTTCTCCATGGCGGC 59
Query 82 AGCCTCATCGGAAGCTGAGCCTCCAACAACAAGGAAACTCGGCAGGCACGATTGGCCAGG 141
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 60 AGCCTCATCGGAAGCTGAGCCTCCGGCAACAAGGAAACTCGGCAGGCACGAATGGCCAGG 119
Query 142 AGCGGAGGCAGAAGCACCAGAAGTTTCACATTTGGAAGAGACTGTACGGCGAGGCCATCA 201
|| ||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 120 AGAGGAGGCAGAAGCACCGGAGGTTTCACATTTGGAAGAGACTGTACGGCGAGGCCACCA 179
Query 202 CGATTCCACGGTGGAAAGATCGGTCGCCGGCGGTGGAGTTATTCTCGGAGGCTTAGCGAC 261
| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 180 CCATTCCACGGTGGAAAGATCGGTTGCCGGAGGTGGAGTTATTCTCGGAGGCTTAGCTAC 239
Query 262 TAA-GTTTCTTGTGGTGGTGTTTTGCTATATAAGGGCTACGAGGAAACACAAACCCAATT 320
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 -AACGTTTCTTGTGGTAGTGTTTTGCTATATAAGGGCTACGAGGAAACACAAACCCAATT 298
Query 321 ATGATGAAAAGGAGACTGAGACGCCTAAGGTGTTAGTTTAA 361
|||||||||||||||||||||| ||||| ||||||||||||
Sbjct 299 ATGATGAAAAGGAGACTGAGACCCCTAAAGTGTTAGTTTAA 339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18046121891
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5