BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928595

Length=565
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G09290.1 | Symbols: TAC1 | telomerase activator1 | chr3:2856...   785    0.0  


> AT3G09290.1 | Symbols: TAC1 | telomerase activator1 | chr3:2856141-2856659 
FORWARD LENGTH=519
Length=519

 Score =  785 bits (425),  Expect = 0.0
 Identities = 495/527 (94%), Gaps = 12/527 (2%)
 Strand=Plus/Plus

Query  21   ATGGAAAACATCAAAAACCCTAAAAACGCAGATGATTGTTCCGATAGCATATCAAAAAAC  80
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGAAAACATCAAAAACCCTAAAAACGCAGATGATTGTTCCGATAGCATATCAAAAAAC  60

Query  81   AGTCATCAGGGCGTTGATGATTCCCTGAACCAGTCAAGATCTTACGTATGCAGTTTCTGC  140
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   AGTCATCAAGGCGTTGATGATTCCCTGAACCAGTCAAGATCTTACGTATGCAGTTTCTGC  120

Query  141  ATAAGGGGCTTCTCGAATGCTCAAGCACTAGGAGGGCATATGAACATCCACAGAAGAGAC  200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  ATAAGGGGCTTCTCGAATGCTCAAGCACTAGGAGGGCATATGAACATCCACAGAAGAGAC  180

Query  201  AGAGCTAAACTCAGACAAAAGCTTATGGAAGATAATAAGGATGATGTTGTTGCTGAGAGT  260
            || |||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct  181  AGGGCTAAACTCAGACAAAAGCTTATGGAAGATAATAAGGATGATGTCGTCGCCGAGAGT  240

Query  261  GATTCATCAGAAGTTGTCTCTCTAGACCTTAATGaacaacaacaacaacaaG-A-A-GCT  317
            ||| |||| |||||||| |||||||||||||||||||||||||||||||||| | | |||
Sbjct  241  GATGCATCCGAAGTTGTGTCTCTAGACCTTAATGAACAACAACAACAACAAGGAGAAGCT  300

Query  318  TTGACATGTGATGATCACGATGATCAAGATCAATATGTTGAGAAAGATTTAAGTCCTAAA  377
            |||||||||||||||||||||   |||  | | |  ||||| || ||| |||||||||||
Sbjct  301  TTGACATGTGATGATCACGAT---CAA--T-A-T--GTTGATAACGATATAAGTCCTAAA  351

Query  378  CAGAAATTAGAGTTTTGGGTTCAAGAAAGCAAGCTTGATACTAATGATCGTGGAAAGGGC  437
            ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct  352  CAGAAATTAGAGTTTTGGGTTCAAGAAAGCAAGCTTGATACTAATGATCATGGAAAGGTC  411

Query  438  ACGGAGGTTAGCATAGATGGTTCGAGTTCGAGACATCATCGTGAGATTGAAGGATTGGAT  497
            ||||||| |||||||||||||||||||||||| ||||||||||| ||||||| |||||||
Sbjct  412  ACGGAGGCTAGCATAGATGGTTCGAGTTCGAGTCATCATCGTGATATTGAAGTATTGGAT  471

Query  498  CTGGAGCTTCGGTTAGGCCAAAGCGTCGTGGAGAAGAAGACAACATA  544
            || ||||||||||||||||||||||||||  ||||||||||||||||
Sbjct  472  CTCGAGCTTCGGTTAGGCCAAAGCGTCGTAAAGAAGAAGACAACATA  518



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27126439380


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5