BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg928601 Length=216 Score E Sequences producing significant alignments: (Bits) Value AT3G09340.1 | Symbols: | Transmembrane amino acid transporter ... 198 1e-50 AT3G09330.1 | Symbols: | Transmembrane amino acid transporter ... 187 3e-47 > AT3G09340.1 | Symbols: | Transmembrane amino acid transporter family protein | chr3:2868050-2870526 REVERSE LENGTH=1587 Length=1587 Score = 198 bits (107), Expect = 1e-50 Identities = 144/162 (89%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 20 ACCGATGACCAAATATGCGTTATCTCTCACACCGATTGTATTAAGTTTAGAAGAACTTAT 79 ||| ||||||||||| |||||| |||||||||||||||| || |||||||||||||||| Sbjct 1212 ACCAATGACCAAATACGCGTTAGCTCTCACACCGATTGTGCTAGGTTTAGAAGAACTTAT 1271 Query 80 ACCGTCTTCAATA-AAGATGAGATCATATGGAGTATCTATGTTTGTTAGAACGATTCTAG 138 ||| | || | | ||||||||||| |||||||||||||| ||| ||| ||||||| ||| Sbjct 1272 GCCGCCATC-AGAGAAGATGAGATCGTATGGAGTATCTATCTTTATTAAAACGATTTTAG 1330 Query 139 TTCTCTATACTTTGGTTGTCGCACTTACATTCCCATTCTTCG 180 |||||| ||||||||||||||||||||||||||||||||||| Sbjct 1331 TTCTCTCTACTTTGGTTGTCGCACTTACATTCCCATTCTTCG 1372 > AT3G09330.1 | Symbols: | Transmembrane amino acid transporter family protein | chr3:2864782-2867230 REVERSE LENGTH=1575 Length=1575 Score = 187 bits (101), Expect = 3e-47 Identities = 142/162 (88%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 20 ACCGATGACCAAATATGCGTTATCTCTCACACCGATTGTATTAAGTTTAGAAGAACTTAT 79 ||||||||||||||| |||||| |||||||||| ||||| || || ||||||||||||| Sbjct 1212 ACCGATGACCAAATACGCGTTAGCTCTCACACCAATTGTGCTAGGTCTAGAAGAACTTAT 1271 Query 80 ACCGTCTTCAATA-AAGATGAGATCATATGGAGTATCTATGTTTGTTAGAACGATTCTAG 138 | | | || | | ||||||||||| |||||||||||||| ||| ||| ||||||| ||| Sbjct 1272 GCTGCCATC-AGAGAAGATGAGATCGTATGGAGTATCTATCTTTATTAAAACGATTTTAG 1330 Query 139 TTCTCTATACTTTGGTTGTCGCACTTACATTCCCATTCTTCG 180 |||||| ||||||||||||||||||||||||||||||||||| Sbjct 1331 TTCTCTCTACTTTGGTTGTCGCACTTACATTCCCATTCTTCG 1372 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 9651407808 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5