BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928601
Length=216
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09340.1 | Symbols: | Transmembrane amino acid transporter ... 198 1e-50
AT3G09330.1 | Symbols: | Transmembrane amino acid transporter ... 187 3e-47
> AT3G09340.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr3:2868050-2870526 REVERSE LENGTH=1587
Length=1587
Score = 198 bits (107), Expect = 1e-50
Identities = 144/162 (89%), Gaps = 2/162 (1%)
Strand=Plus/Plus
Query 20 ACCGATGACCAAATATGCGTTATCTCTCACACCGATTGTATTAAGTTTAGAAGAACTTAT 79
||| ||||||||||| |||||| |||||||||||||||| || ||||||||||||||||
Sbjct 1212 ACCAATGACCAAATACGCGTTAGCTCTCACACCGATTGTGCTAGGTTTAGAAGAACTTAT 1271
Query 80 ACCGTCTTCAATA-AAGATGAGATCATATGGAGTATCTATGTTTGTTAGAACGATTCTAG 138
||| | || | | ||||||||||| |||||||||||||| ||| ||| ||||||| |||
Sbjct 1272 GCCGCCATC-AGAGAAGATGAGATCGTATGGAGTATCTATCTTTATTAAAACGATTTTAG 1330
Query 139 TTCTCTATACTTTGGTTGTCGCACTTACATTCCCATTCTTCG 180
|||||| |||||||||||||||||||||||||||||||||||
Sbjct 1331 TTCTCTCTACTTTGGTTGTCGCACTTACATTCCCATTCTTCG 1372
> AT3G09330.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr3:2864782-2867230 REVERSE LENGTH=1575
Length=1575
Score = 187 bits (101), Expect = 3e-47
Identities = 142/162 (88%), Gaps = 2/162 (1%)
Strand=Plus/Plus
Query 20 ACCGATGACCAAATATGCGTTATCTCTCACACCGATTGTATTAAGTTTAGAAGAACTTAT 79
||||||||||||||| |||||| |||||||||| ||||| || || |||||||||||||
Sbjct 1212 ACCGATGACCAAATACGCGTTAGCTCTCACACCAATTGTGCTAGGTCTAGAAGAACTTAT 1271
Query 80 ACCGTCTTCAATA-AAGATGAGATCATATGGAGTATCTATGTTTGTTAGAACGATTCTAG 138
| | | || | | ||||||||||| |||||||||||||| ||| ||| ||||||| |||
Sbjct 1272 GCTGCCATC-AGAGAAGATGAGATCGTATGGAGTATCTATCTTTATTAAAACGATTTTAG 1330
Query 139 TTCTCTATACTTTGGTTGTCGCACTTACATTCCCATTCTTCG 180
|||||| |||||||||||||||||||||||||||||||||||
Sbjct 1331 TTCTCTCTACTTTGGTTGTCGCACTTACATTCCCATTCTTCG 1372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9651407808
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5