BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg928609 Length=1002 Score E Sequences producing significant alignments: (Bits) Value AT3G09385.1 | Symbols: | pseudogene, hypothetical protein | ch... 580 6e-165 AT4G21605.1 | Symbols: | pseudogene, hypothetical protein | ch... 193 3e-48 AT4G34170.1 | Symbols: | Galactose oxidase/kelch repeat superf... 182 8e-45 AT4G23580.1 | Symbols: | Galactose oxidase/kelch repeat superf... 163 3e-39 AT4G39290.1 | Symbols: | Galactose oxidase/kelch repeat superf... 65.8 8e-10 > AT3G09385.1 | Symbols: | pseudogene, hypothetical protein | chr3:2886535-2887714 FORWARD LENGTH=1180 Length=1180 Score = 580 bits (314), Expect = 6e-165 Identities = 475/548 (87%), Gaps = 30/548 (5%) Strand=Plus/Plus Query 472 GGAGGTTTTTGATACATCCCTAGCGAGGAGATATTTGGA--CTTGAAGTACAAAAGCGTA 529 ||| ||||||| | |||||||||||||||||||||||| || ||||||| ||||||| Sbjct 629 GGA-GTTTTTG-CAGATCCCTAGCGAGGAGATATTTGGAGGCTCAAAGTACAGAAGCGTA 686 Query 530 GAGTATGAAGGATCTGTCTATGTGAAGTATGAGGCAAAGGATGCGACTTACAAGCTGGC- 588 |||||||||||| |||||||||| |||| |||||||||||||| |||||||||||| || Sbjct 687 GAGTATGAAGGAACTGTCTATGTAAAGTCTGAGGCAAAGGATGTGACTTACAAGCT-GCA 745 Query 589 TAAAGGTAGATGGCGAACGGCAGACTTAGCGATAAATAAAGGATGG-G--GTACTTCATC 645 |||||||||||||||||| |||||| |||||||||||||||| ||| | || |||||| Sbjct 746 TAAAGGTAGATGGCGAACAGCAGACATAGCGATAAATAAAGGGTGGTGATGTCCTTCATT 805 Query 646 ATCTCATTATTGTGTGATAGAGAACGTGTTCTACCGCTATAATAATAGAAGGATCGAATG 705 ||| |||||||||||||||||||||||||||||||| |||| | ||||||| |||||||| Sbjct 806 ATCCCATTATTGTGTGATAGAGAACGTGTTCTACCGTTATACTGATAGAAGAATCGAATG 865 Query 706 GTGTGACTCCGACAAAAGATTGTGGACAACTTTGAAAGGTTTGGAAAAATTGCTTA-TTT 764 || ||||||||| |||||||| |||||||||||||||||| |||||||||||| || ||| Sbjct 866 GTATGACTCCGAAAAAAGATTATGGACAACTTTGAAAGGTGTGGAAAAATTGCGTAGTTT 925 Query 765 --CTCATGTAAACTTGGTGAATTATGGTGGGAAAATGGCTGTTGTGTGGGTAGAGTATGC 822 ||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 926 TTCTCGTGTAAACTTGGTGAATTATGGTGGGAAAATGGCAGTTGTGTCGGTAGAGTATGT 985 Query 823 GTACGGTAAGAAGGATGAAGAGACGAAAATTTGGTGTGCGGAAATTGCGATTGAAAAACG 882 || |||||||||||| | | | ||||||||||| ||||||||||||||||||||||| Sbjct 986 GTTCGGTAAGAAGGA-G--GC-A--AAAATTTGGTGGGCGGAAATTGCGATTGAAAAACG 1039 Query 883 -CGAGAA-GAGG-GAGATTTGGGGAATGGTAAAGTGGTTTGACATTGTGTTTAGAACCAA 939 | | || | || ||||||||||||||| || ||||| |||||||||||||||||||||| Sbjct 1040 TC-A-AACG-GGAGAGATTTGGGGAATGCTAGAGTGGCTTGACATTGTGTTTAGAACCAA 1096 Query 940 TGA---GCCATATCATTTT-GCGCATGTTCTTGCTACTACCGTTTGATGGATCTGAGTCA 995 ||| | ||||| | ||| | || || ||||||||||||| |||||||| | ||| ||| Sbjct 1097 TGACAAGTCATAT-AGTTTAGAGCGTGCTCTTGCTACTACCATTTGATGGCTATGAATCA 1155 Query 996 TGA-TCAT 1002 ||| |||| Sbjct 1156 TGACTCAT 1163 Score = 540 bits (292), Expect = 1e-152 Identities = 349/377 (93%), Gaps = 2/377 (1%) Strand=Plus/Plus Query 111 GCCGCACCGAGAGTTGTCTTTATGTGTGTTTACGGCTATTTACCGAAACTAG-CCAACTA 169 ||||||||||||| ||||||||||||||||| || |||||||||||| || | ||||||| Sbjct 238 GCCGCACCGAGAGATGTCTTTATGTGTGTTTCCGACTATTTACCGAATCT-GACCAACTA 296 Query 170 CGTTGGTTCACGGTCTCTCAGGGACCATTTAACTCCaaaaaaaaaTTGGTTCCGATTTCA 229 |||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 297 CGTTGGTTCACGCTCTGTCAGGGACCATTTAACTCCAAAAAAATTTTGGTTCCGATTTCA 356 Query 230 TCTCCTAATTTTCCATCTGCATTGTGGTCGGAGGCTGCTATAGTTGGTTCTAATATCCAT 289 |||||||||||||||||||||| |||||||| ||||| ||||| ||| |||| ||| || Sbjct 357 TCTCCTAATTTTCCATCTGCATCCTGGTCGGATGCTGCAATAGTCGGTCCTAACATCTAT 416 Query 290 GCTATTGGAGGATTAGTAAATAAGAATGCTTCGTCTAGCGTCATGGTCATGGATTGTCAT 349 ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| || Sbjct 417 GCTATTGGAGGGTTAGTAAATAAGAATTATTCGTCTAGCGTCATGGTCATGGATTGTTAT 476 Query 350 TCTCACACATGGCGTGAGGCACCAAGTATGCTTATGGCCCGTGAGTCCCACTCTGTTTGC 409 ||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| Sbjct 477 TCTCACACATGGCGTGAGGCACCAAGTATGCATGTGGCCCGTTTGTCCCACTCTGTTTGT 536 Query 410 ATCCATGATGGGAAAATATATGTAACAGGAGGTTGCAAAAATCTTGATTCAACGAATTGG 469 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 GTCCATGATGGGAAAATATATGTAACAGGAGGTTGCAAAAATCTTGATTCAACGAATTGG 596 Query 470 ATGGAGGTTTTTGATAC 486 ||||||||||||||||| Sbjct 597 ATGGAGGTTTTTGATAC 613 Score = 169 bits (91), Expect = 6e-41 Identities = 105/112 (94%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 1 AAGAAGACGGATGACAATTCTGATGCTACCTGATGATTTGCTATTCAACTGCTTAGCCCG 60 |||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 80 AAGAAGACAGATGACAATTCTGATGCTTCCTAATGATTTGCTATTCAACTGCTTAGCCCG 139 Query 61 CATCTCAAGATTGTGTTACCCAACTCTCTCTTTAGTCTCCAAGAGATTCCGC 112 |||||||||||||| ||| ||||||||||| |||||||||| |||||||||| Sbjct 140 CATCTCAAGATTGTATTATCCAACTCTCTCGTTAGTCTCCACGAGATTCCGC 191 > AT4G21605.1 | Symbols: | pseudogene, hypothetical protein | chr4:11487646-11488821 FORWARD LENGTH=1176 Length=1176 Score = 193 bits (104), Expect = 3e-48 Identities = 184/222 (83%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 272 GTTGGTTCTAATATCCATGCTATTGGAGGATT-AGTAAAT-A-AGAA-T---GCTTCGTC 324 |||||| |||||||| | |||||||| ||||| ||| ||| | |||| | ||||||| Sbjct 414 GTTGGTCCTAATATCTACGCTATTGGGGGATTCAGT-AATAATAGAACTAAACCTTCGTC 472 Query 325 TAGCGTCATGGTCATGGATTGTCATTCTCACACATGGCGTGAGGCACCAAGTATGCTTAT 384 ||||||||||||||||||||||| | ||||||||||| ||||||| || || |||| | Sbjct 473 TAGCGTCATGGTCATGGATTGTCGTACTCACACATGGTGTGAGGCCCCTAGCATGCAGGT 532 Query 385 GGCCCGTGAGTCCCACTCTGTTTGCATCCATGATGGGAAAATATATGTAACAGGAGGTTG 444 |||||| || ||| ||| |||| ||| ||||||||||||||||||||||||||| | Sbjct 533 TTCCCGTGTGTTCCAATCTACTTGCGTCCTTGATGGGAAAATATATGTAACAGGAGGCCG 592 Query 445 CAAAAATCTTGATTCAACGAATTGGATGGAGGTTTTTGATAC 486 | || ||| ||||||||||| |||||||||||||||||||| Sbjct 593 CGGAACTCTCGATTCAACGAAATGGATGGAGGTTTTTGATAC 634 > AT4G34170.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr4:16368087-16369025 FORWARD LENGTH=882 Length=882 Score = 182 bits (98), Expect = 8e-45 Identities = 179/218 (82%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 272 GTTGGTTCTAATATCCATGCTATTGGAGGATTAGTAAATAAG-AATGCTTCGTCTAGCGT 330 |||||| |||||||| |||| ||||| ||| | |||| || ||| ||| ||||||||| Sbjct 271 GTTGGTCCTAATATCGATGCCATTGGCGGAGGAATAAA-GAGTAATACTTTGTCTAGCGT 329 Query 331 CATGGTCATGGATTGTCATTCTCACACATGGCGTGAGGCACCAAGTATGCTTATGGCCCG 390 ||||||||||| | || ||||||||| |||||||| || ||||| |||| || |||| Sbjct 330 TATGGTCATGGACTCTCGTTCTCACACGTGGCGTGAAGCTCCAAGCATGCGGGTGCCCCG 389 Query 391 TGA-G-TCCCACTCTGTTTGCATCCATGATGGGAAAATATATGTAACAGGAGGTTGCAAA 448 | | ||||| || ||||||| || |||||||||||||||||||| ||||| || | Sbjct 390 -CATGTTCCCA-TCAGTTTGCACCCTTGATGGGAAAATATATGTAATGGGAGGCTGTGAT 447 Query 449 AATCTTGATTCAACGAATTGGATGGAGGTTTTTGATAC 486 ||||| |||||||||||||||||||||||||||||||| Sbjct 448 AATCTAGATTCAACGAATTGGATGGAGGTTTTTGATAC 485 > AT4G23580.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr4:12304246-12305397 REVERSE LENGTH=1152 Length=1152 Score = 163 bits (88), Expect = 3e-39 Identities = 368/492 (75%), Gaps = 64/492 (13%) Strand=Plus/Plus Query 487 ATCCCTAGCGAGGAGATAT---TTGGACT-TGAAGTACAAAAGCGTAGAG-TATGAAGGA 541 ||||||||||||||||||| || || || ||||| ||||||| || ||| ||||| Sbjct 631 ATCCCTAGCGAGGAGATATGCAAAGG-CTCTG-AGTACTTAAGCGTA-AGTTATCAAGGA 687 Query 542 TCTGTCTATGTGAAGTATGAGGCAAAGGATGCGACTTACAAGCTGGC-TAAAGGTAGATG 600 | ||||||||||||| ||| | ||| |||| |||||||||| | || |||||||| ||| Sbjct 688 ACCGTCTATGTGAAGTCTGATGAAAAAGATGTGACTTACAAGAT-GCATAAAGGTAAATG 746 Query 601 GCGA-ACGGCAGACTTAGCG-ATAAATAAAGGATGGGGTACT-TCATCATC-TCA--TTA 654 | || | ||||||| || | || ||||| |||||| || || || ||||| ||| ||| Sbjct 747 GAGAGA-GGCAGACATA-TGTATGAATAATGGATGGAGT-CTGTCGTCATCATCATCTTA 803 Query 655 TTGTGTGATAGAGAACGTGTTCTACCGCTATAATAAT-A-GAAG-GAT-CGAATGGTGTG 710 ||||||| ||||||||||||||||||| | || | | | | | ||| || |||| || Sbjct 804 TTGTGTGGTAGAGAACGTGTTCTACCG-T-TACT-GTGAGGGGGAGATACG-TTGGTATG 859 Query 711 A-CTCCGACAAAAGATTGTGGACAACTTTGAAAGG-TTTGGAA-A------A-ATTGCTT 760 | || | | || ||| ||||||| |||||| || || |||| | | |||| | Sbjct 860 ACCT-CAAGAATAGAGCATGGACAATTTTGAAGGGCTTGGGAAGATTGCCTAGTTTGCCT 918 Query 761 A-TT-TC--TC--ATG-TAAACTTGGTGAATTATGGTGGGAAAATGGCTG--TTGTGTGG 811 | || || || ||| |||| |||| | || ||||||| |||||||| | || | ||| Sbjct 919 ACTTCTCATTCAAATGTTAAA-TTGGCGGATCATGGTGGAAAAATGGC-GATTTCT-TGG 975 Query 812 GTA-GAGTATGCGTACGGTAAGA-AGGATGAAGAGACGAAA-ATTTGGTGTGCGGAAATT 868 | | |||||| || || || ||| ||| | | ||| |||||||||||||||||| Sbjct 976 G-AGGAGTATATGT-TTGT-TGATAGG--GAA-A-A--AAAGATTTGGTGTGCGGAAATT 1026 Query 869 GCGATTGAAAAACGCGAGAA-GAGGGAGATTTGGGGAATGGTAAAGTGGTTTGACATTGT 927 ||||||||||||| | | || | |||| |||||||||| | | |||||||||||| ||| Sbjct 1027 GCGATTGAAAAACACCAAAATG-GGGAAATTTGGGGAACGCTTGAGTGGTTTGACAATGT 1085 Query 928 GTTTAGAACCAA 939 ||||| | |||| Sbjct 1086 GTTTATATCCAA 1097 > AT4G39290.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr4:18285205-18286302 REVERSE LENGTH=1098 Length=1098 Score = 65.8 bits (35), Expect = 8e-10 Identities = 85/108 (79%), Gaps = 8/108 (7%) Strand=Plus/Plus Query 640 TTCATCATCTCATTATTGTGTGATAGAGAACGTGTTCTACCGCTATAATAAT-AGAAGGA 698 ||||| |||| | |||||||||||||||||||||||||||| |||| | | ||| | Sbjct 752 TTCAT-TTCTC-TAATTGTGTGATAGAGAACGTGTTCTACCGTTATAGTTACGAGATGC- 808 Query 699 TCGAATGGTGTGACTCC-G-ACAAAAGATTGTGGACAACTTTGAAAGG 744 || |||||| |||||| | | |||| || |||| || ||||||||| Sbjct 809 TCCAATGGTATGACTCATGTAGAAAA-ATA-TGGAAAAATTTGAAAGG 854 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49078761619 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5