BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928609
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09385.1 | Symbols: | pseudogene, hypothetical protein | ch... 580 6e-165
AT4G21605.1 | Symbols: | pseudogene, hypothetical protein | ch... 193 3e-48
AT4G34170.1 | Symbols: | Galactose oxidase/kelch repeat superf... 182 8e-45
AT4G23580.1 | Symbols: | Galactose oxidase/kelch repeat superf... 163 3e-39
AT4G39290.1 | Symbols: | Galactose oxidase/kelch repeat superf... 65.8 8e-10
> AT3G09385.1 | Symbols: | pseudogene, hypothetical protein |
chr3:2886535-2887714 FORWARD LENGTH=1180
Length=1180
Score = 580 bits (314), Expect = 6e-165
Identities = 475/548 (87%), Gaps = 30/548 (5%)
Strand=Plus/Plus
Query 472 GGAGGTTTTTGATACATCCCTAGCGAGGAGATATTTGGA--CTTGAAGTACAAAAGCGTA 529
||| ||||||| | |||||||||||||||||||||||| || ||||||| |||||||
Sbjct 629 GGA-GTTTTTG-CAGATCCCTAGCGAGGAGATATTTGGAGGCTCAAAGTACAGAAGCGTA 686
Query 530 GAGTATGAAGGATCTGTCTATGTGAAGTATGAGGCAAAGGATGCGACTTACAAGCTGGC- 588
|||||||||||| |||||||||| |||| |||||||||||||| |||||||||||| ||
Sbjct 687 GAGTATGAAGGAACTGTCTATGTAAAGTCTGAGGCAAAGGATGTGACTTACAAGCT-GCA 745
Query 589 TAAAGGTAGATGGCGAACGGCAGACTTAGCGATAAATAAAGGATGG-G--GTACTTCATC 645
|||||||||||||||||| |||||| |||||||||||||||| ||| | || ||||||
Sbjct 746 TAAAGGTAGATGGCGAACAGCAGACATAGCGATAAATAAAGGGTGGTGATGTCCTTCATT 805
Query 646 ATCTCATTATTGTGTGATAGAGAACGTGTTCTACCGCTATAATAATAGAAGGATCGAATG 705
||| |||||||||||||||||||||||||||||||| |||| | ||||||| ||||||||
Sbjct 806 ATCCCATTATTGTGTGATAGAGAACGTGTTCTACCGTTATACTGATAGAAGAATCGAATG 865
Query 706 GTGTGACTCCGACAAAAGATTGTGGACAACTTTGAAAGGTTTGGAAAAATTGCTTA-TTT 764
|| ||||||||| |||||||| |||||||||||||||||| |||||||||||| || |||
Sbjct 866 GTATGACTCCGAAAAAAGATTATGGACAACTTTGAAAGGTGTGGAAAAATTGCGTAGTTT 925
Query 765 --CTCATGTAAACTTGGTGAATTATGGTGGGAAAATGGCTGTTGTGTGGGTAGAGTATGC 822
||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 926 TTCTCGTGTAAACTTGGTGAATTATGGTGGGAAAATGGCAGTTGTGTCGGTAGAGTATGT 985
Query 823 GTACGGTAAGAAGGATGAAGAGACGAAAATTTGGTGTGCGGAAATTGCGATTGAAAAACG 882
|| |||||||||||| | | | ||||||||||| |||||||||||||||||||||||
Sbjct 986 GTTCGGTAAGAAGGA-G--GC-A--AAAATTTGGTGGGCGGAAATTGCGATTGAAAAACG 1039
Query 883 -CGAGAA-GAGG-GAGATTTGGGGAATGGTAAAGTGGTTTGACATTGTGTTTAGAACCAA 939
| | || | || ||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 1040 TC-A-AACG-GGAGAGATTTGGGGAATGCTAGAGTGGCTTGACATTGTGTTTAGAACCAA 1096
Query 940 TGA---GCCATATCATTTT-GCGCATGTTCTTGCTACTACCGTTTGATGGATCTGAGTCA 995
||| | ||||| | ||| | || || ||||||||||||| |||||||| | ||| |||
Sbjct 1097 TGACAAGTCATAT-AGTTTAGAGCGTGCTCTTGCTACTACCATTTGATGGCTATGAATCA 1155
Query 996 TGA-TCAT 1002
||| ||||
Sbjct 1156 TGACTCAT 1163
Score = 540 bits (292), Expect = 1e-152
Identities = 349/377 (93%), Gaps = 2/377 (1%)
Strand=Plus/Plus
Query 111 GCCGCACCGAGAGTTGTCTTTATGTGTGTTTACGGCTATTTACCGAAACTAG-CCAACTA 169
||||||||||||| ||||||||||||||||| || |||||||||||| || | |||||||
Sbjct 238 GCCGCACCGAGAGATGTCTTTATGTGTGTTTCCGACTATTTACCGAATCT-GACCAACTA 296
Query 170 CGTTGGTTCACGGTCTCTCAGGGACCATTTAACTCCaaaaaaaaaTTGGTTCCGATTTCA 229
|||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 297 CGTTGGTTCACGCTCTGTCAGGGACCATTTAACTCCAAAAAAATTTTGGTTCCGATTTCA 356
Query 230 TCTCCTAATTTTCCATCTGCATTGTGGTCGGAGGCTGCTATAGTTGGTTCTAATATCCAT 289
|||||||||||||||||||||| |||||||| ||||| ||||| ||| |||| ||| ||
Sbjct 357 TCTCCTAATTTTCCATCTGCATCCTGGTCGGATGCTGCAATAGTCGGTCCTAACATCTAT 416
Query 290 GCTATTGGAGGATTAGTAAATAAGAATGCTTCGTCTAGCGTCATGGTCATGGATTGTCAT 349
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 417 GCTATTGGAGGGTTAGTAAATAAGAATTATTCGTCTAGCGTCATGGTCATGGATTGTTAT 476
Query 350 TCTCACACATGGCGTGAGGCACCAAGTATGCTTATGGCCCGTGAGTCCCACTCTGTTTGC 409
||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct 477 TCTCACACATGGCGTGAGGCACCAAGTATGCATGTGGCCCGTTTGTCCCACTCTGTTTGT 536
Query 410 ATCCATGATGGGAAAATATATGTAACAGGAGGTTGCAAAAATCTTGATTCAACGAATTGG 469
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GTCCATGATGGGAAAATATATGTAACAGGAGGTTGCAAAAATCTTGATTCAACGAATTGG 596
Query 470 ATGGAGGTTTTTGATAC 486
|||||||||||||||||
Sbjct 597 ATGGAGGTTTTTGATAC 613
Score = 169 bits (91), Expect = 6e-41
Identities = 105/112 (94%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 1 AAGAAGACGGATGACAATTCTGATGCTACCTGATGATTTGCTATTCAACTGCTTAGCCCG 60
|||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 80 AAGAAGACAGATGACAATTCTGATGCTTCCTAATGATTTGCTATTCAACTGCTTAGCCCG 139
Query 61 CATCTCAAGATTGTGTTACCCAACTCTCTCTTTAGTCTCCAAGAGATTCCGC 112
|||||||||||||| ||| ||||||||||| |||||||||| ||||||||||
Sbjct 140 CATCTCAAGATTGTATTATCCAACTCTCTCGTTAGTCTCCACGAGATTCCGC 191
> AT4G21605.1 | Symbols: | pseudogene, hypothetical protein |
chr4:11487646-11488821 FORWARD LENGTH=1176
Length=1176
Score = 193 bits (104), Expect = 3e-48
Identities = 184/222 (83%), Gaps = 8/222 (4%)
Strand=Plus/Plus
Query 272 GTTGGTTCTAATATCCATGCTATTGGAGGATT-AGTAAAT-A-AGAA-T---GCTTCGTC 324
|||||| |||||||| | |||||||| ||||| ||| ||| | |||| | |||||||
Sbjct 414 GTTGGTCCTAATATCTACGCTATTGGGGGATTCAGT-AATAATAGAACTAAACCTTCGTC 472
Query 325 TAGCGTCATGGTCATGGATTGTCATTCTCACACATGGCGTGAGGCACCAAGTATGCTTAT 384
||||||||||||||||||||||| | ||||||||||| ||||||| || || |||| |
Sbjct 473 TAGCGTCATGGTCATGGATTGTCGTACTCACACATGGTGTGAGGCCCCTAGCATGCAGGT 532
Query 385 GGCCCGTGAGTCCCACTCTGTTTGCATCCATGATGGGAAAATATATGTAACAGGAGGTTG 444
|||||| || ||| ||| |||| ||| ||||||||||||||||||||||||||| |
Sbjct 533 TTCCCGTGTGTTCCAATCTACTTGCGTCCTTGATGGGAAAATATATGTAACAGGAGGCCG 592
Query 445 CAAAAATCTTGATTCAACGAATTGGATGGAGGTTTTTGATAC 486
| || ||| ||||||||||| ||||||||||||||||||||
Sbjct 593 CGGAACTCTCGATTCAACGAAATGGATGGAGGTTTTTGATAC 634
> AT4G34170.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:16368087-16369025 FORWARD LENGTH=882
Length=882
Score = 182 bits (98), Expect = 8e-45
Identities = 179/218 (82%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 272 GTTGGTTCTAATATCCATGCTATTGGAGGATTAGTAAATAAG-AATGCTTCGTCTAGCGT 330
|||||| |||||||| |||| ||||| ||| | |||| || ||| ||| |||||||||
Sbjct 271 GTTGGTCCTAATATCGATGCCATTGGCGGAGGAATAAA-GAGTAATACTTTGTCTAGCGT 329
Query 331 CATGGTCATGGATTGTCATTCTCACACATGGCGTGAGGCACCAAGTATGCTTATGGCCCG 390
||||||||||| | || ||||||||| |||||||| || ||||| |||| || ||||
Sbjct 330 TATGGTCATGGACTCTCGTTCTCACACGTGGCGTGAAGCTCCAAGCATGCGGGTGCCCCG 389
Query 391 TGA-G-TCCCACTCTGTTTGCATCCATGATGGGAAAATATATGTAACAGGAGGTTGCAAA 448
| | ||||| || ||||||| || |||||||||||||||||||| ||||| || |
Sbjct 390 -CATGTTCCCA-TCAGTTTGCACCCTTGATGGGAAAATATATGTAATGGGAGGCTGTGAT 447
Query 449 AATCTTGATTCAACGAATTGGATGGAGGTTTTTGATAC 486
||||| ||||||||||||||||||||||||||||||||
Sbjct 448 AATCTAGATTCAACGAATTGGATGGAGGTTTTTGATAC 485
> AT4G23580.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:12304246-12305397 REVERSE LENGTH=1152
Length=1152
Score = 163 bits (88), Expect = 3e-39
Identities = 368/492 (75%), Gaps = 64/492 (13%)
Strand=Plus/Plus
Query 487 ATCCCTAGCGAGGAGATAT---TTGGACT-TGAAGTACAAAAGCGTAGAG-TATGAAGGA 541
||||||||||||||||||| || || || ||||| ||||||| || ||| |||||
Sbjct 631 ATCCCTAGCGAGGAGATATGCAAAGG-CTCTG-AGTACTTAAGCGTA-AGTTATCAAGGA 687
Query 542 TCTGTCTATGTGAAGTATGAGGCAAAGGATGCGACTTACAAGCTGGC-TAAAGGTAGATG 600
| ||||||||||||| ||| | ||| |||| |||||||||| | || |||||||| |||
Sbjct 688 ACCGTCTATGTGAAGTCTGATGAAAAAGATGTGACTTACAAGAT-GCATAAAGGTAAATG 746
Query 601 GCGA-ACGGCAGACTTAGCG-ATAAATAAAGGATGGGGTACT-TCATCATC-TCA--TTA 654
| || | ||||||| || | || ||||| |||||| || || || ||||| ||| |||
Sbjct 747 GAGAGA-GGCAGACATA-TGTATGAATAATGGATGGAGT-CTGTCGTCATCATCATCTTA 803
Query 655 TTGTGTGATAGAGAACGTGTTCTACCGCTATAATAAT-A-GAAG-GAT-CGAATGGTGTG 710
||||||| ||||||||||||||||||| | || | | | | | ||| || |||| ||
Sbjct 804 TTGTGTGGTAGAGAACGTGTTCTACCG-T-TACT-GTGAGGGGGAGATACG-TTGGTATG 859
Query 711 A-CTCCGACAAAAGATTGTGGACAACTTTGAAAGG-TTTGGAA-A------A-ATTGCTT 760
| || | | || ||| ||||||| |||||| || || |||| | | |||| |
Sbjct 860 ACCT-CAAGAATAGAGCATGGACAATTTTGAAGGGCTTGGGAAGATTGCCTAGTTTGCCT 918
Query 761 A-TT-TC--TC--ATG-TAAACTTGGTGAATTATGGTGGGAAAATGGCTG--TTGTGTGG 811
| || || || ||| |||| |||| | || ||||||| |||||||| | || | |||
Sbjct 919 ACTTCTCATTCAAATGTTAAA-TTGGCGGATCATGGTGGAAAAATGGC-GATTTCT-TGG 975
Query 812 GTA-GAGTATGCGTACGGTAAGA-AGGATGAAGAGACGAAA-ATTTGGTGTGCGGAAATT 868
| | |||||| || || || ||| ||| | | ||| ||||||||||||||||||
Sbjct 976 G-AGGAGTATATGT-TTGT-TGATAGG--GAA-A-A--AAAGATTTGGTGTGCGGAAATT 1026
Query 869 GCGATTGAAAAACGCGAGAA-GAGGGAGATTTGGGGAATGGTAAAGTGGTTTGACATTGT 927
||||||||||||| | | || | |||| |||||||||| | | |||||||||||| |||
Sbjct 1027 GCGATTGAAAAACACCAAAATG-GGGAAATTTGGGGAACGCTTGAGTGGTTTGACAATGT 1085
Query 928 GTTTAGAACCAA 939
||||| | ||||
Sbjct 1086 GTTTATATCCAA 1097
> AT4G39290.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:18285205-18286302 REVERSE LENGTH=1098
Length=1098
Score = 65.8 bits (35), Expect = 8e-10
Identities = 85/108 (79%), Gaps = 8/108 (7%)
Strand=Plus/Plus
Query 640 TTCATCATCTCATTATTGTGTGATAGAGAACGTGTTCTACCGCTATAATAAT-AGAAGGA 698
||||| |||| | |||||||||||||||||||||||||||| |||| | | ||| |
Sbjct 752 TTCAT-TTCTC-TAATTGTGTGATAGAGAACGTGTTCTACCGTTATAGTTACGAGATGC- 808
Query 699 TCGAATGGTGTGACTCC-G-ACAAAAGATTGTGGACAACTTTGAAAGG 744
|| |||||| |||||| | | |||| || |||| || |||||||||
Sbjct 809 TCCAATGGTATGACTCATGTAGAAAA-ATA-TGGAAAAATTTGAAAGG 854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49078761619
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5