BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928610

Length=552
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G09390.1 | Symbols: MT2A, ATMT-K, ATMT-1 | metallothionein 2...   634    0.0  


> AT3G09390.1 | Symbols: MT2A, ATMT-K, ATMT-1 | metallothionein 
2A | chr3:2889486-2890229 REVERSE LENGTH=538
Length=538

 Score =  634 bits (343),  Expect = 0.0
 Identities = 462/513 (90%), Gaps = 34/513 (7%)
 Strand=Plus/Plus

Query  58   TTTGAATTTTCTCGAGAAAAATGTCTTGCTGTGGAGGAAACTGCGGTTGTGGATCTGGCT  117
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  22   TTTGAATTTTCTCGAGAAAAATGTCTTGCTGTGGAGGAAACTGCGGATGTGGATCTGGCT  81

Query  118  GCAAGTGCGGCAACGGATGTGGAGGTTGCAAAATGTACCCTGACTTGGGATTCTCCGGCG  177
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  82   GCAAGTGCGGCAACGGTTGTGGAGGTTGCAAAATGTACCCTGACTTGGGATTCTCCGGCG  141

Query  178  AGACGACCACAACTGAGACTTTTGTCTTGGGCGTTGCACCGGCGATGAAGAATCAATACG  237
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  142  AGACAACCACAACTGAGACTTTTGTCTTGGGCGTTGCACCGGCGATGAAGAATCAGTACG  201

Query  238  AGGCTTCAGGCGAGAGTAACAACGCTGAGAACGATGCTTGCAAGTGTGGATCTGACTGCA  297
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  202  AGGCTTCAGGGGAGAGTAACAACGCTGAGAACGATGCTTGCAAGTGTGGATCTGACTGCA  261

Query  298  AGTGTGACCCTTGCACCTGTAAATGAAGAC-CCTTTTTAATTTATAAGAAGCAGAGATAA  356
            ||||||| ||||||||||| || ||||||  |||||||||   |||||   |||||||||
Sbjct  262  AGTGTGATCCTTGCACCTGCAAGTGAAGAAGCCTTTTTAA---ATAAG---CAGAGATAA  315

Query  357  TCGAGTCT-TT-ATTTAATTAAGTTATTTAATAAGTAA-CC-T-TA-A---TGGTGTTCT  407
            |||||||| || | |||||||||||||| ||||||||| || | || |   ||||||| |
Sbjct  316  TCGAGTCTCTTTAATTAATTAAGTTATTCAATAAGTAAACCATATATAGGATGGTGTTTT  375

Query  408  -AGGATTGGTTTATGTGTAATAATGGCTGCAGCCTGCAGCTTATCTTTTAGCCGA-CAAT  465
             ||| |||||||||||||||||||||||      | ||||||||||||||||||| || |
Sbjct  376  TAGGTTTGGTTTATGTGTAATAATGGCT------T-CAGCTTATCTTTTAGCCGATCATT  428

Query  466  AGTCTTTTGTGTGTGTTTTGATCAATATCTTTTAGATGTCT--C---T--GCCATGTGAT  518
             ||||||||||| ||||||||||| ||||||||||||||||  |   |  ||||||||||
Sbjct  429  -GTCTTTTGTGTTTGTTTTGATCA-TATCTTTTAGATGTCTAGCAACTCTGCCATGTGAT  486

Query  519  GAGTTTGTACTTCCAGTTGAATGATAAAAATAT  551
            ||||||||||||||||| ||||||||| |||||
Sbjct  487  GAGTTTGTACTTCCAGTGGAATGATAATAATAT  519



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26473395469


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5