BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928614
Length=1375
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09405.1 | Symbols: | Pectinacetylesterase family protein |... 508 4e-143
AT3G09410.1 | Symbols: | Pectinacetylesterase family protein |... 444 1e-123
> AT3G09405.1 | Symbols: | Pectinacetylesterase family protein
| chr3:2894812-2897674 REVERSE LENGTH=1735
Length=1735
Score = 508 bits (275), Expect = 4e-143
Identities = 349/385 (91%), Gaps = 4/385 (1%)
Strand=Plus/Plus
Query 248 TTTTTGCTTGGATGGAAGCTTGCCTGGTTATCACTTTCATAAGGGTTCAGGATCTGGCTC 307
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 500 TTTTTGCTTAGATGGAAGCTTACCTGGTTATCACTTTCATAAGGGTTCAGGATCTGGCTC 559
Query 308 CAAAAGCTGGCTTCTTT-TCCTAGAGGGTGGAGGCTGGTGTAATACTATAGAGTCATGTT 366
||| ||||||||||||| | |||||||||||||| |||| ||| || ||||||||||
Sbjct 560 CAATAGCTGGCTTCTTTATT-TAGAGGGTGGAGGCGGGTGCCGTACAATTGAGTCATGTT 618
Query 367 CTTCTCGAGCAATGACTAGCTTAGGTTCTTCCAGCTTCTTTGAACATAAAGTGGCCTTTC 426
|| || ||||||||||||| ||||||||||||| ||||||||||||| ||||| |||||
Sbjct 619 CTGCTAGAGCAATGACTAGGTTAGGTTCTTCCAACTTCTTTGAACATGAAGTG-CCTTTT 677
Query 427 AA-GGTGTTTTAAGCAGTGACCCATCTCAAAATCCAGACTTCTTTAACTGGAATAGAGTT 485
|| |||||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 678 TTTGGCGTTTTAAGCAGTGACCCATCTCAAAACCCTGACTTCTTTAACTGGAACAGAGTT 737
Query 486 CTGATAAGGTACTGTGATGGTGCTTCTTTTGCTGGACACCCTGAAGCTGAATTCAAGAAT 545
||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 738 ATGATACGGTACTGTGATGGTGCTTGTTTTTCTGGACACCCTGAAGCTGAATTCAAGAAT 797
Query 546 GAGACGCGGCTTTTCTTTCGCGGCCAGCTCATTTGGGAGGCAATTATGGATGAACTGTTG 605
|| || ||||||||||| ||||||||||||||||||||||| || ||||||||| |||||
Sbjct 798 GAAACACGGCTTTTCTTCCGCGGCCAGCTCATTTGGGAGGCTATCATGGATGAATTGTTG 857
Query 606 TCGATGGGCATGTCACATGCGAAAC 630
|||||||||||||||||||||||||
Sbjct 858 TCGATGGGCATGTCACATGCGAAAC 882
Score = 473 bits (256), Expect = 2e-132
Identities = 321/352 (91%), Gaps = 5/352 (1%)
Strand=Plus/Plus
Query 1015 AGATTCAAAATGTCCTGGTACCAGATTCTGCAGATATAGATG-AATATTGGGCAATGTGT 1073
|||||||||| | |||||||||||||||| | ||| |||||| || | ||| ||| |||
Sbjct 1201 AGATTCAAAACGGCCTGGTACCAGATTCTCCGGATCTAGATGAAAGA-TGGAAAATTTGT 1259
Query 1074 AGACTCAATATTCAGGAATGTGATGCCGCCCAAATGAAAGTTCTACATGGTTTTCGCAGT 1133
||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 1260 AGACTCAATATTCAGGAATGTGATGCCGCACAAATGAAAGTTCTGCATGGTTTCCGCAGT 1319
Query 1134 TCTCTAATGGATGCGATCGGAGAATTTCATGAGAACAAAGAGGGTGGGATGTTTATAAAT 1193
|| || || |||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1320 TCCCTGATCGATGCGATAGGAGAATTTCATGTGAACAAAGAGGGTGGGATGTTTATAAAT 1379
Query 1194 TCGTGCAATTCTCATTGCCAGACAAGAGAGTCATCATGGCACTCCCCAACCTCACCAAGA 1253
|||||||||||||||||||||| ||||||| |||||||| ||| |||||||| |||||
Sbjct 1380 TCGTGCAATTCTCATTGCCAGATAAGAGAG---TCATGGCATTCCGCAACCTCAACAAGA 1436
Query 1254 ATCGAAAATAAGACGATTGCAGAGTCTGTAGGTGATTGGTACTTCAACCGAAAACCAGTG 1313
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1437 ATCGAAAATAAGACGATTGCAGAGTCTGTAGGTGATTGGTACTTCAACCGAAAACCGGTG 1496
Query 1314 AAGCTGATCGATTGTCCATACCCGTGCAATACCTCTTGTTGAACATGGATTT 1365
||||| ||||||||||| || ||||||||| |||||||||||||||||||||
Sbjct 1497 AAGCTAATCGATTGTCCTTATCCGTGCAATGCCTCTTGTTGAACATGGATTT 1548
Score = 248 bits (134), Expect = 1e-64
Identities = 189/214 (88%), Gaps = 10/214 (5%)
Strand=Plus/Plus
Query 1 CTTTGCCTCTCTGTTCTTCAATGGCGATTCGCTCTCTGCTACGATGCAGAAAATGGTCTA 60
||||| || ||||||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 291 CTTTG-CT-TCTGTTCTTCAATGGTGATTCGCTCTCTGCTACAATGCAGAACATGGTCTA 348
Query 61 AAAGTGAATGGCTTGTGGCTGCAATCGGACTAGTCTTGATCGTGTT-TTCCTTTTCTTTC 119
| ||||| |||||| | ||| |||||||| ||||||||||||| || ||||||||||||
Sbjct 349 AGAGTGACTGGCTTCTCGCTTCAATCGGAATAGTCTTGATCGT-TTATTCCTTTTCTTTG 407
Query 120 TCCGTCGATTCAACTTCAGA--C--T--CCTCCGTTGATCGTAGCGACCTAGTTAAACTG 173
||| || ||||||||||||| | | |||||||||| |||||||| ||||||||||||
Sbjct 408 TCCTTCAATTCAACTTCAGACTCTATCCCCTCCGTTGACCGTAGCGATCTAGTTAAACTG 467
Query 174 AAGTTGTCGAGTAAAGCTAAAGAGAGAGGAGCTT 207
||| ||||||||||||||||||||||||||||||
Sbjct 468 AAGCTGTCGAGTAAAGCTAAAGAGAGAGGAGCTT 501
Score = 183 bits (99), Expect = 3e-45
Identities = 112/118 (95%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 900 GTGCCTGATGTGCTTGGAAACCCAACAATGGGATCTTTCTTTCATGATGTGGTTACCCTG 959
|||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1008 GTGCTTGATGTCCTTGGAAACCCAACAATGGGATCTTTCTTTCATGATGTTGTTACCCTG 1067
Query 960 CAG-GACGTAGATAAGAGCTTGGATCAGAATTGTGTAGCCAAAATGGAACCATCTAAG 1016
||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1068 CAGAG-CGTAGATAAGAGCTTGGATCAGAATTGTGTTGCCAAAATGGAACCATCTAAG 1124
Score = 156 bits (84), Expect = 6e-37
Identities = 109/121 (90%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 708 CTCACAGGATGTTCTGCAGGTGGCTTGGCTACTCTTATACATTGTGACTACTTTCGTGAT 767
||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||| ||
Sbjct 891 CTCACAGGATGTTCTGCTGGTGGCTTGTCTACTCTAATACATTGTGACTACTTTCGAGAC 950
Query 768 AATCTGCC-AAGAGATGCAGCTGTTAAATGTGTTTCCGATGGAGGCTATTTTCTCAACGT 826
||||||| || ||||||| ||||||||||||||||||||||||||||| |||| || ||
Sbjct 951 CATCTGCCTAA-AGATGCAACTGTTAAATGTGTTTCCGATGGAGGCTATATTCTTAATGT 1009
Query 827 G 827
|
Sbjct 1010 G 1010
> AT3G09410.1 | Symbols: | Pectinacetylesterase family protein
| chr3:2897638-2901019 REVERSE LENGTH=1740
Length=1740
Score = 444 bits (240), Expect = 1e-123
Identities = 343/391 (88%), Gaps = 14/391 (4%)
Strand=Plus/Plus
Query 248 TTTTTGCTTGGATGGAAGCTTGCCTGGTTATCACTTTCATAAGGGTTCAGGATCTGGCTC 307
|||||| |||||||||||||||||||| || ||||||||| ||||||| |||||||||||
Sbjct 257 TTTTTGTTTGGATGGAAGCTTGCCTGGGTACCACTTTCATGAGGGTTCTGGATCTGGCTC 316
Query 308 CAAAAGCTGGCTTCTT--TTCCTAGAGGGTGGAGGCTGGTGTAATACTA-TAGAGTCATG 364
| ||||||||||| || || | ||||||||||||||||| || || | | | ||||||
Sbjct 317 CCAAAGCTGGCTTGTTCATT--TGGAGGGTGGAGGCTGGTGCAACAC-AGTTGCGTCATG 373
Query 365 TTCTTCTCGAGCAATGACTAGCTTAGGTTCTTCCAGCTTCTTTGAACATA-AAGTGGCCT 423
|||| |||||||| |||||| ||||||||||||| || ||||||||| | |||||||||
Sbjct 374 TTCTGCTCGAGCATTGACTAAATTAGGTTCTTCCAACTACTTTGAACA-AGAAGTGGCCT 432
Query 424 TTCAAGGTGTTTTAAGCAGTGACCCATCTCAAAATCCAGACTTCTTTAACTGGAA-TAGA 482
|||||||||||||||| |||||||||||||||||||| || |||||||||||||| ||
Sbjct 433 TTCAAGGTGTTTTAAGTAGTGACCCATCTCAAAATCCTGAATTCTTTAACTGGAACAAG- 491
Query 483 GTT-CTGATAAGGTACTGTGATGGTGCTTCTTTTGCTGGACACCCTGAAGCTGAATTCAA 541
||| | |||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 492 GTTGC-GATAAGGTACTGTGATGGTGCTTCTTTTTCTGGACGCCCTGAAGCTGAATTCAA 550
Query 542 GAATGAG-ACGCGGCTTTTCTTTCGCGGCCAGCTCATTTGGGAGGCAATTATGGATGAAC 600
||||| | || ||||||||||| || |||||||| ||||||||||| ||||| |||||||
Sbjct 551 GAATG-GCACACGGCTTTTCTTCCGGGGCCAGCTTATTTGGGAGGCTATTATTGATGAAC 609
Query 601 TGTTGTCGATGGGCATGTCACATGCGAAACA 631
| ||||| |||||||||||| |||| |||||
Sbjct 610 TTTTGTCAATGGGCATGTCAGATGCCAAACA 640
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67720535205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5