BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928624
Length=1957
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09530.1 | Symbols: ATEXO70H3, EXO70H3 | exocyst subunit exo... 2861 0.0
> AT3G09530.1 | Symbols: ATEXO70H3, EXO70H3 | exocyst subunit exo70
family protein H3 | chr3:2926302-2928215 FORWARD LENGTH=1914
Length=1914
Score = 2861 bits (1549), Expect = 0.0
Identities = 1798/1920 (94%), Gaps = 9/1920 (0%)
Strand=Plus/Plus
Query 21 ATGAGGAGCAAGAGCGGTTTTAGTTTCTTCTCTAAGATGACTTCTTCAAGGAAGAGGCCT 80
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGAGGAGCAAGAGCGGTTTTAGTTTCTTCTCTAAAATGACTTCTTCAAGGAAGAGGCCT 60
Query 81 TCTCTCTCAATACCTAGCAAGAGTTACGAGT-CATCGGATATCAACAAGACCATCGACAA 139
||||||||| |||||||||||||| |||||| || ||||| | |||||||||||||||||
Sbjct 61 TCTCTCTCACTACCTAGCAAGAGTCACGAGTCCA-CGGATGTTAACAAGACCATCGACAA 119
Query 140 TGCAGCCGAGATTATCGAGAAATGGAACACCGAGTATGTTTCCTCA-AATAAATTTTATT 198
|||||||||||||||||||||||||||||| |||||||||||| | || ||||||||||
Sbjct 120 TGCAGCCGAGATTATCGAGAAATGGAACACAGAGTATGTTTCC-GATAAGAAATTTTATT 178
Query 199 CTCTGTTTTGCGAGAGCAAGCGAGAAGCGAAAAAGTTTGTTAAACGCGTGAAGGAACTGC 258
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 179 CTCTGTTTTGCGAGAGCAAGCGAGACGCGAAGAAGTTTGTTAAACGCGTGAAGGAACTGC 238
Query 259 AGAACGCTATGGATATGTTGATTAGAGAAGATCCGAATTCGGAGAATCTCCTTAGAGCTC 318
||||||| |||||| ||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 239 AGAACGCCATGGATTTGTTGATTAGAGAAGATCCAAATTCGGAGAAACTCCTTAGAGCTC 298
Query 319 AGAATCTAATGCAGATCGCCATGAAACGACTTCAGAAAGAGTTTCTCCAGATTCTTTCGA 378
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 299 AGAATCTGATGCAGATCGCTATGAAACGACTTCAGAAAGAGTTTCTCCAGATTCTTTCAA 358
Query 379 TGAACCGTGCGCATTTGGATCCTGAATCCGTCTCCTCTAGATCGCCTACATCTGTCGTAT 438
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 359 TGAACCGTGCGCATTTGGATCCTGAATCCATCTCCTCTAGATCTCCTACATCTGTCGTAT 418
Query 439 CCAACGATGACGATATTTGGCACGAGTCTCGTTCAGCTAGTGATTCCATCATCGAAGTCG 498
| |||||||| ||| ||||||||||||||||||||||| |||| |||||||||||||| |
Sbjct 419 CGAACGATGATGATGTTTGGCACGAGTCTCGTTCAGCTGGTGACTCCATCATCGAAGTTG 478
Query 499 AGGAGGTGTCAAAGAATTCTAGGACAGAACTGAAATCCATAGCAGACTGCATGATCGCTG 558
|||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 479 AGGAGGTGTCAAAGAACTCTAGGACAGAGCTGAAATCCATAGCAGATTGCATGATCGCTG 538
Query 559 CAGGTTATGCAAAAGAGTGTGCGAGTACTTATAAATCTATTCGAAAATCGATAGTCGATG 618
| |||| ||| ||||||||||||| |||||||||||| ||||||||||||||||| ||||
Sbjct 539 CGGGTTGTGCGAAAGAGTGTGCGACTACTTATAAATCCATTCGAAAATCGATAGTTGATG 598
Query 619 AATCCATTTATCGTCTTGGAGTAGAGAAAATCAGTTCTTCCAAGGCGAAAAAGATGCCAT 678
|||| ||||| ||||| ||||||||||| || || || ||||||||||||||||||||||
Sbjct 599 AATCGATTTACCGTCTCGGAGTAGAGAATATAAGCTCATCCAAGGCGAAAAAGATGCCAT 658
Query 679 GTGAAGTTGTTGAGTTGAAGATGAATAGGTGGATTGAGGCGGTTAAGGTCTCGATGAAGA 738
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 659 GTGAGGTTGTTGAGTTGAAGATGAATAGGTGGATAGAGGCGGTTAAGGTCTCGATGAAGA 718
Query 739 CTCTCTTCAATGGCGAAAAGAGTCTATGCGATGATATCTTTGAATCCTCTGTTTCTCTTA 798
||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||
Sbjct 719 CTCTCTTCAATGGCGAAAAGACTCTATGCGATGAAATCTTCGAATCCTCTGTTTCTCTTA 778
Query 799 GGGAGTCTTGTTTCCGAGACATCTCCAAGGAAGGAGCTCTTCTTCTGTTTGGATTCCCGG 858
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GAGAGTTTTGTTTCCGAGACATCTCCAAGGAAGGAGCTCTTCTTCTGTTTGGATTCCCGG 838
Query 859 AAACCATCGCCTTAAGAGACAAGAAAAATCCAAATCCGGAGAAGATTTTCCCGTTGCTAG 918
|||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 839 AAACTATCACCTTAAGAGACAAGAAAAATCCACATCCGGAGAAGATTTTCCCGTTGCTAG 898
Query 919 ATATGTATTGCACGATCACCGAGAACTTGCTTGCGATTGAATCGATCTTCTCGTTTCCAT 978
||||||||||||||||||| || |||||||||||||||||| | ||||||||||||||||
Sbjct 899 ATATGTATTGCACGATCACAGATAACTTGCTTGCGATTGAAGCAATCTTCTCGTTTCCAT 958
Query 979 CAATTTCGATTGTTCGAACTCAAGCTCACAGCTCACTTAGCCGACTAAGTGAGTCAATTC 1038
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 959 CAATTTCGAATGTTCGAACTCAAGCTCACAGCTCACTTAGCCGACTAAGCGAGTCAATTC 1018
Query 1039 TTTCTCATTTGGTGGATTTTGAATCTGAAATCCGTAAAGACTCGTCCAAGACAGTGGTTC 1098
|| |||| ||| |||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1019 TTGCTCACTTGATGGATTTTGAATCTCAAATACGTAAAGACTCGTCCAAGACAGTGGTTC 1078
Query 1099 GTGGTGGAGGAGTTCATCCGATGACTATCTCCGCCATGAATCACATCTCCCGACTCGCGG 1158
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1079 GTGGTGGAGGAGTTCATCCGATGACTATCTCCGCCATGAATCACATCTCTCGACTCGCGG 1138
Query 1159 AATACAGTACCGCTCTCACGGATATCCTCAAGGGATCATCATCATCATCTTCGGCTAAAT 1218
||||||||| |||||||| |||| |||||||||||||||||||||||||| ||||||
Sbjct 1139 AATACAGTAACGCTCTCATTAATATACTCAAGGGATCATCATCATCATCTTCCGCTAAAG 1198
Query 1219 CATTGCTTCCTAAATCTTACTTCAATGTCTCAGAATCCGAAGAATCTCCGGCT-TCAGAG 1277
||||||||||||||||||||||||||||||||||||| ||||||||||| | | || |||
Sbjct 1199 CATTGCTTCCTAAATCTTACTTCAATGTCTCAGAATCTGAAGAATCTCCAG-TGTCGGAG 1257
Query 1278 CTAAAAGTACGATTCGCGTGGATGATTCTCGTCCTCCTCTGTAAAATCGATGGCAAAGCT 1337
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1258 CTAAAAGCACGATTCGCGTGGATGATTCTCGTCCTCCTCTGTAAAATCGACGGCAAAGCT 1317
Query 1338 GAGATGTACAAGGACTTCTCGATGCAGTATCTCTTCTTAGCCAACAATCTCCAACATGTT 1397
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1318 GAAATGTACAAGGACTTCTCAATGCAGTATCTCTTCTTAGCCAACAATCTCCAACACGTT 1377
Query 1398 GTCTCACGTGCTCGATCCACGAACGTGAAGGATGTTCTCGGCGACGATTGGATCGCGAAG 1457
|||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||
Sbjct 1378 GTCTCACGTGCTCGATCCACGAACGTGAAGCATGTTCTCGGCAACGATTGGATAGCGAAA 1437
Query 1458 CATTCCGAGAAAGTTAGGCAGTTTGCAAGAAGCTATGAGAGGCTAGCATGGGGTCCATTG 1517
| || ||||||||||| ||||| ||||||||||| ||| || | |||||||||||||||
Sbjct 1438 AACTCAGAGAAAGTTAGACAGTTCGCAAGAAGCTACGAGCGGTTGGCATGGGGTCCATTG 1497
Query 1518 GCGTCGATGTGTCCGGCGATTAGTACTTCGGAGGCGGTGGAGATGTCGCCCGAAGAAGCG 1577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 GCGTCGATGTGTCCGGCGATTAGTACTTCGGAGGCGGTGGAGATGTCGCCCGAAGAAGCG 1557
Query 1578 ATGATGCAATTCAAAAAGTTCAACGAGACTTTCGAGAACACGTGCGAGGCACAGAGTGAG 1637
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1558 ATGATGCAATTCAAAAAGTTCAACGAGACTTTCGAGAGCACGTGCGAGGCACAGAGTGAG 1617
Query 1638 TGCATTGTACTTGATCCGAAACTATTGGACGAGATGAGAATTTCGATAGGGAGAAAACTG 1697
||||| ||||| |||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 1618 TGCATCGTACTAGATCCGAAGCTGTTGGACGAGATGAGAATTTCGATCGGGAGAAAACTG 1677
Query 1698 TTGCCGGTTTACCGCGATTTTTACAACGCTCATAGAAATGCCGTTATGTTAGCGGGAACG 1757
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 TTACCGGTTTACCGCGATTTTTACAACGCTCATAGAAATGCCGTTATGTTAGCGGGAACG 1737
Query 1758 GAAGGTGAGTGGAATGTCCGATATACCCCTGAAGATATCGGAAACCACTTGTCAGAGCTG 1817
||||| |||||||||||||||||| |||||||||||| |||||||||||||| ||||||
Sbjct 1738 GAAGGCCAGTGGAATGTCCGATATAACCCTGAAGATATTGGAAACCACTTGTCGGAGCTG 1797
Query 1818 TTTAGCGGGAAGGGTATTTTGGAGAATCAATATGTTTGTACGCCAGATTTTTGTCTTGTT 1877
|||||||| |||||||||| |||||| |||||| |||||||||||||||||| |||
Sbjct 1798 TTTAGCGGAAAGGGTATTTCGGAGAAAGGATATGTCTGTACGCCAGATTTTTGT---GTT 1854
Query 1878 ACAACAGCTACTCCAACTCCTGGACGAAAGACTCGATCTTTATCATGCAGAAAATTTTGA 1937
|||||| ||||||||||||||| |||||||||||||||||| |||||||||| |||||||
Sbjct 1855 ACAACACCTACTCCAACTCCTGTACGAAAGACTCGATCTTTGTCATGCAGAAGATTTTGA 1914
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96937252395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5