BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928630
Length=613
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09590.1 | Symbols: | CAP (Cysteine-rich secretory proteins... 863 0.0
> AT3G09590.1 | Symbols: | CAP (Cysteine-rich secretory proteins,
Antigen 5, and Pathogenesis-related 1 protein) superfamily
protein | chr3:2944953-2945513 FORWARD LENGTH=561
Length=561
Score = 863 bits (467), Expect = 0.0
Identities = 532/563 (94%), Gaps = 5/563 (1%)
Strand=Plus/Plus
Query 21 ATGTCTGTAACGTTGTCTCATCCATCATCATGTCTTGTCCTTCTCCTCCTTCTATTTTCC 80
|||||||||||||||||||||||||||||||||||| | |||||| ||||||| ||||||
Sbjct 1 ATGTCTGTAACGTTGTCTCATCCATCATCATGTCTTCTTCTTCTCTTCCTTCTCTTTTCC 60
Query 81 GGTCATCCCTCCG-CCTCCGGGACCTCCATCCCCGACATGGTGAACACGGCGGCACGTGT 139
||||||||||||| ||| ||| ||||||||||||||| ||||||||||||||| ||| |
Sbjct 61 GGTCATCCCTCCGTCCT-CGGAACCTCCATCCCCGACGCGGTGAACACGGCGGCGCGTTT 119
Query 140 GTTAAACAGAGCGAGAAGAGCAAAACTTG-CGAGAGAATTTCTACAAGCGCACAACGATG 198
| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 120 GGTAAACAGAGCGAGAAGAGCAAAAC-TGTCGAGAGAATTTCTACAAGCGCACAACGATG 178
Query 199 CACGTGTTTCTTCAGGCGTGCCAACTCTCGAATGGGACAGAGACCTGGCCCGATTCGCTG 258
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 179 CACGTGTTTCTTCAGGCGTGCCAACGCTCGGATGGGACAGAGACCTGGCCCGATTCGCTG 238
Query 259 ATAAATGGGCTAAACAACGTAAGCCCGATTGCAGCATGATACATTCAGGTGGGCCTTACG 318
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 239 ATAAATGGGCTAAACAACGTAAGTCCGATTGCAGTATGATACATTCAGGTGGGCCTTACG 298
Query 319 GCGAGAACATTTTCTGGTACCGGCGTAAGAACATGTGGTCGCCGGAGAAAGTGGTGACGA 378
| ||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||
Sbjct 299 GTGAGAACATTTTCTGGCACCGGCGTAAGAAGACGTGGTCGCCGGAGAAAGTGGTGACGA 358
Query 379 GATGGTATGAGGAAAGGTTTAACTACGACGTGAAAACAAACACGTGCGCATCGGGAAAGA 438
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 359 GATGGTTTGAGGAAAGGTTTAACTACGACGTGAAAACAAACACGTGCGCACCGGGAAAGA 418
Query 439 TGTGCGGCCATTACACGCAGATGGTGTGGAGAGCCACCACAGCCGTTGGATGCGCACGTG 498
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 419 TGTGCGGCCATTACACGCAGATGGTGTGGAGAGAGACCACAGCCGTTGGATGCGCACGTG 478
Query 499 TGAAATGCAACAACGGTCGTGGCTATCTTGTGGTGTGTGAATATGACCCACGTGGGAATT 558
|||||||| | ||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 479 TGAAATGCCATAACGGTCGTGGCTATCTTGTGGTGTGTGAATATGATCCACGCGGGAATT 538
Query 559 ACGAAGGTGAAAGACC-TTTTGA 580
|||||||||||||||| ||||||
Sbjct 539 ACGAAGGTGAAAGACCATTTTGA 561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29537678436
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5