BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928631

Length=232
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G07250.1 | Symbols:  | nuclear transport factor 2 (NTF2) fam...   135    1e-31


> AT3G07250.1 | Symbols:  | nuclear transport factor 2 (NTF2) family 
protein / RNA recognition motif (RRM)-containing protein 
| chr3:2300579-2308305 REVERSE LENGTH=3885
Length=3885

 Score =  135 bits (73),  Expect = 1e-31
 Identities = 95/106 (90%), Gaps = 0/106 (0%)
 Strand=Plus/Plus

Query  60    TATTGGTATGCTTTTGTGGAGTTTGAGGAAGCAGATGCTGCGAAGAGGGCAATAAAGGCG  119
             ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||
Sbjct  1771  TATTGGTATGCTTTTGTGGAGTTTGAGGAAGCAGATGCTGCCAAGAGAGCAATACAGGCG  1830

Query  120   TCTCCTCCATATATTGATGGGCATACAACTGACGTGGGGAAGAAGC  165
             ||||||| | || ||||||| || |||||| |||||| | ||||||
Sbjct  1831  TCTCCTCTAAATGTTGATGGCCACACAACTTACGTGGAGCAGAAGC  1876



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10455691792


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5