BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928632
Length=3794
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41820.1 | Symbols: RGTA2, ATRGTA2 | RAB geranylgeranyl tran... 1908 0.0
AT3G07250.1 | Symbols: | nuclear transport factor 2 (NTF2) fam... 348 3e-94
> AT5G41820.1 | Symbols: RGTA2, ATRGTA2 | RAB geranylgeranyl transferase
alpha subunit 2 | chr5:16740804-16743433 FORWARD LENGTH=2064
Length=2064
Score = 1908 bits (1033), Expect = 0.0
Identities = 1471/1668 (88%), Gaps = 88/1668 (5%)
Strand=Plus/Plus
Query 2144 CAGGAACTTTCACGCTTGGAACTATCGCAGGTTTGTTGTGGAGCTAACCAAGACGTCACC 2203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 CAGGAACTTTCACGCTTGGAACTATCGCAGGTTTGTTGTGGAGCTAACCAAGACGTCAGA 506
Query 2204 ACAGGATGAGTTGCAGTATACAACTGATTTAATCAATGATGTTAGTTTTAGCAACTATTC 2263
| |||||||||||||||||||||||||| | |||| |||| ||||||| | || ||||||
Sbjct 507 AGAGGATGAGTTGCAGTATACAACTGATATGATCAGTGATATTAGTTTCACCATCTATTC 566
Query 2264 TGCGTGGCACAATCGTAGTGCACTTCTTTCAAGTTTAGTCGCAAAAAAGGCTGATGGGTT 2323
||||||||| ||||||||| |||| ||||||||||||| ||||||||||||||||||||
Sbjct 567 TGCGTGGCATTATCGTAGTGTACTTGTTTCAAGTTTAGTGGCAAAAAAGGCTGATGGGTT 626
Query 2324 TATGCCAAAGGAAACGATTCGTCGTGAATTAGATTATGTACATAATGCTATTTTTACG-G 2382
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 627 TATGCCAAAGGAAACGATTCGTCGTGAATTGGATTATGTACATAGTGCTATTTTTACGTT 686
Query 2383 ACGAAGATG-ACCAAAGCGCCTGGTTTTATTATCTCTGGCTTCTTGATCAAACTGTTAAA 2441
| ||||| | | ||||| | |||||||||||| || |||||||||||||| |||||||||
Sbjct 687 A-GAAGA-GAAACAAAGTGGCTGGTTTTATTACCTTTGGCTTCTTGATCAGACTGTTAAA 744
Query 2442 ATGGAGACTCCTCTTCGCACTTCCTCGTGGCCTTCTGATGGTTCCATTATCATTCTATCT 2501
||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 745 ATGGAGATTCCTCTTCGCTTTTCCTCGTGGCCTTCAGATGGTTCCATTATCATTCTATCT 804
Query 2502 GGACCTGGGTGCTTCAATGGCTCTTCTTCT--T-CTAAGTTCACTACTTTCTGTTCCGAG 2558
||||||| |||||||||| |||||||||| | ||||||| ||||||||||||||||||
Sbjct 805 GGACCTGACTGCTTCAATGCCTCTTCTTCTACTACTAAGTTGACTACTTTCTGTTCCGAG 864
Query 2559 TCTGCTTCTTTTCCACTGATTCTTTACTTTGACCAAGCCGTCAGTGGAGTAAGCTCGTCT 2618
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 865 TCTGGTTCTTTTCCACTGATTCTTTACTTTGACCAAGCCGTAAGTGGAGTAAGCTCGTCA 924
Query 2619 ACTGTTACTATT-GATTCTGAACTACAAGGAAATCAGGACCTTGTTTGGGAACCAGTTTC 2677
|||||||||||| || |||||||| | || | |||||||||||||||||||||||
Sbjct 925 ACTGTTACTATTGGA-TCTGAACT-C-----AA--A-GACCTTGTTTGGGAACCAGTTTC 974
Query 2678 GGAT---AAAAACTCTCAACT-G--TCTTGTGTATGGGTTGCTCGTCTGAAATTTGACAG 2731
|||| |||||||||||| | | |||||||| |||||||||||||||||||||||| |
Sbjct 975 GGATAAGAAAAACTCTCAAGTGGACTCTTGTGTTTGGGTTGCTCGTCTGAAATTTGACTG 1034
Query 2732 TACTGAACCTTGC-TT--TCGCAAGGAAAACAAAGTGAAGGTCAGCCTTGGGAAGTCTCA 2788
|| ||||||||| || ||| ||||||| |||||| |||||||||||| | |
Sbjct 1035 TAGAGAACCTTGCTTTAGTCGTAAGGAAACCAAAGTCAAGGTCAGCCTT--G--G----- 1085
Query 2789 AGGAATTGTTTCTTCCAGGGGATGTAACTTGAGCGCTCCTTTTGAGTTTGTATTTACAGT 2848
||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||| |
Sbjct 1086 AGGAATTGTTTCTTCCATGGGATGTAACTTGACCGCTCCTTATGAGTTTGTATTTACACT 1145
Query 2849 GCATATTCATGACACTGTCG--G-AGA---G-C-C-ACAAGAAGGCATTGTTTCGTGGAC 2899
|| ||||||||||||||||| | ||| | | | ||||||| |||||||||| |||||
Sbjct 1146 GCGTATTCATGACACTGTCGAAGTAGAGTTGTCACAACAAGAAAGCATTGTTTCATGGAC 1205
Query 2900 GGATGGTTTTGACAATT-GG--G---ATGCACAGTCGAAGGATTTGAATTCTCTTATCAC 2953
||||||||||||||||| || | |||||| |||||| ||||||||||||| | | |
Sbjct 1206 GGATGGTTTTGACAATTGGGATGATAATGCACTGTCGAATGATTTGAATTCTC-T-T-A- 1261
Query 2954 CTCGTATCAGTTAAACGCTGATACAGGTTTTGAGTGGCGTAAGCAAGCTATAAAGACAGA 3013
| || | |||||||||||||| |||||||||||||||||| |||||||||||| |||
Sbjct 1262 C-CG---C-CTTAAACGCTGATACGGGTTTTGAGTGGCGTAAGAAAGCTATAAAGATAGA 1316
Query 3014 GATTGAA-TGTTTTCGTGA-TTTGCATGACAGCAAATTTGGAAAGCTCATTCTTGCAAGG 3071
||||||| | ||||||| | ||||| |||||||||| |||||||||||||||||||||||
Sbjct 1317 GATTGAACT-TTTTCGT-ACTTTGCCTGACAGCAAAATTGGAAAGCTCATTCTTGCAAGG 1374
Query 3072 CTTTTGATGGCTGAGGAAACTATGATCTCGGATGATGCTGTTAAGGGTGTCCATTATGTT 3131
||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct 1375 CTTTTGATGGCTGAGGAAACTATGATCTC-----A-------AATGGTGTCCATTATAAA 1422
Query 3132 GAAATCCTCCAGCTGTATAACGATCTGATGGTTCTTAATTCTTCGCATTACCAGTACTAC 3191
||||||||||| |||||||||||||| |||| |||| |||||| |||| |||||||||||
Sbjct 1423 GAAATCCTCCAACTGTATAACGATCTAATGGCTCTTGATTCTTGGCATAACCAGTACTAC 1482
Query 3192 AAGGATGAGCACAGCGTAGCTCTTCTCCACAAGGTGACTTCAAGCACCGAATCCCTGTCC 3251
||||||||||||||||||||||| ||||||||||||||||||| || |||||| |||||
Sbjct 1483 AAGGATGAGCACAGCGTAGCTCTAATCCACAAGGTGACTTCAAGAACTGAATCCATGTCC 1542
Query 3252 AGACACCTCTTTCTGTACAGGAATATGAACAATATTGTATGTCTAAGGCTCAGTAACTTA 3311
||||||||||||| |||||||||||||||||||||| ||||| ||||||||| |||||||
Sbjct 1543 AGACACCTCTTTCGGTACAGGAATATGAACAATATTATATGTTTAAGGCTCAATAACTTA 1602
Query 3312 ACATTATCTCGGATAGCCACTGTCGAGAAGTTTCTATTTGTCCAAATGTTAGATCTCAGT 3371
||| |||||||||||||| | ||||||||||| |||||||||||||||||||||||||||
Sbjct 1603 ACACTATCTCGGATAGCCGCGGTCGAGAAGTTGCTATTTGTCCAAATGTTAGATCTCAGT 1662
Query 3372 TACAATGACCTTCATTCCGCTGAAGGATTGGAGGCGATGCAGCTTCTCTGTTGCCTAAAT 3431
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1663 CACAATGAGCTTCATTCAGCTGAAGGATTGGAGGCGATGCAGCTTCTCTGTTGCCTAAAT 1722
Query 3432 CTGTGTCACAACAGAATCAGGAGCTTTTCAGCCCTTGATTCTCTAAGACATCTGAAGCAG 3491
||| |||||||||||||||||||||||||||| ||||| ||| |||||||||| ||||||
Sbjct 1723 CTGAGTCACAACAGAATCAGGAGCTTTTCAGCGCTTGACTCTTTAAGACATCTTAAGCAG 1782
Query 3492 CTTAGAGTGTTGGATGTTTCACATAACGACAT--G-GGCGGCAAGCACCCAGTGGACACA 3548
||||||||||||||||||||||||||| |||| | || || || | |||||| ||||||
Sbjct 1783 CTTAGAGTGTTGGATGTTTCACATAACCACATCTGTGG-GG-AA-CTCCCAGTAGACACA 1839
Query 3549 ACAGGGTACCTTTGTTCTAGGCCGCTCTCTAATTCGGCTGAAATTGGAAGACAGGTGCCT 3608
||| |||||||||||||| ||||||||||||||||| ||||| ||||||| ||||||||
Sbjct 1840 ACAAGGTACCTTTGTTCTTCGCCGCTCTCTAATTCGGGTGAAACTGGAAGAGAGGTGCCT 1899
Query 3609 TGTAAATACTGGGATGCGTATTTGGTGCTTAGAGATTTGAAGAAACTGAAGCAGTTAGAT 3668
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1900 AATAAATACCAGGATGCGTATTTGGTGCTTAGAGATTTGATGAAACTGAAGCAGTTAGAT 1959
Query 3669 ATAATAAGAGGCAACGACCTAAT-T--GCAGGGGAAGAGTTCAGCTCCTTTGTCCGCCAG 3725
|| || |||||||||||||||| | ||||| |||||||||||||||||||||||||||
Sbjct 1960 AT--TA-GAGGCAACGACCTAATATTTGCAGGAGAAGAGTTCAGCTCCTTTGTCCGCCAG 2016
Query 3726 GTTCTTCCAAAGCTTGTATTGCTTGATGGCCACAAACTCGCTAGTTAA 3773
||| | ||||||||||||| ||||||||||||||||||| | ||||||
Sbjct 2017 GTTGTGCCAAAGCTTGTATGGCTTGATGGCCACAAACTCACAAGTTAA 2064
Score = 303 bits (164), Expect = 6e-81
Identities = 262/308 (85%), Gaps = 12/308 (4%)
Strand=Plus/Plus
Query 1822 CCGCTGCTAAAGCGTTTAAGCTCCGGTCGATCCAATCCCAGTTCATGTCCAACCACCATC 1881
|||| |||||||| || |||||||||| |||| ||||||||||||||||| |||||||
Sbjct 44 CCGCAGCTAAAGCCCTTGAGCTCCGGTCTCTCCAGTCCCAGTTCATGTCCAATCACCATC 103
Query 1882 GAAAGATTTACACACAGGAAGCAATTCAATTAAGCGCGAAGCTTCTAGCAATCAATCCGG 1941
||||||||||||| |||||||||||||||||||||||||||||||| || |||||| |
Sbjct 104 AAAAGATTTACACAAAGGAAGCAATTCAATTAAGCGCGAAGCTTCTAATAACCAATCCAG 163
Query 1942 AGGCCTACACGGCTTGGAACTATCGGAAGCTCGCCGTCGAGGATAACCTTTCCCGAATCG 2001
|| |||||| ||||||||||||| |||||||||| ||||| | || | ||| ||
Sbjct 164 AGTTCTACACTGCTTGGAACTATCCGAAGCTCGCCTTCGAG--TC-CCGA-CTCGA--CG 217
Query 2002 ACGACTCTGATCCAAGCTTGGTCAACTCAATTCTCAATGAAGAACTTGAAGTCGTAGCAA 2061
| |||||||||||||||||||||||||||||| || |||||||||| | ||||||| |||
Sbjct 218 AGGACTCTGATCCAAGCTTGGTCAACTCAATTATCGATGAAGAACTAGGAGTCGTA-CAA 276
Query 2062 T-TGCCCTTCGACGA--AATATCAAGTCCTATGGGGCTTGGTATCATCGAAAGTGGATTT 2118
|||| || || || ||| ||||||| ||||||||||||||||||||||||||| |||
Sbjct 277 AATGCC-TTGGA-GAGGAATGTCAAGTCATATGGGGCTTGGTATCATCGAAAGTGGGTTT 334
Query 2119 TGAATAAA 2126
||| ||||
Sbjct 335 TGAGTAAA 342
> AT3G07250.1 | Symbols: | nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
| chr3:2300579-2308305 REVERSE LENGTH=3885
Length=3885
Score = 348 bits (188), Expect = 3e-94
Identities = 308/363 (85%), Gaps = 19/363 (5%)
Strand=Plus/Plus
Query 201 TACTATAAGACCTTGCAATACTATCCGGGGCTTCTTTATCGCTACTATAACGATGTCAGT 260
|||||||| | ||||||| ||| |||| | |||| | |||||||||| |||||||||
Sbjct 2854 TACTATAACAACTTGCAAAACTCCCCGGAGATTCTCCCTGGCTACTATAAAGATGTCAGT 2913
Query 261 AAGATTACACGGCCTGGACTTGATGGAACGATGCGTTCCTCTACCCTACAGGACATGATC 320
||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||
Sbjct 2914 AAGATTACACGGCCTGGACTTGATGGAACGATGCGTTCCTCTACCCTACCGGATATAATC 2973
Query 321 AAGGATCTTGATATGCTATCTTCTGGTGGTTTTGATTCGGTTGAGGACCTTGAGGTAACC 380
|||||||||||||||||||| |||||||||||||||||||||||| | | | ||
Sbjct 2974 GAGGATCTTGATATGCTATCTCCTGGTGGTTTTGATTCGGTTGAGG---T--A---A-CC 3024
Query 381 AGTTTCATGTCCCAAGAATCTCAT-AGTGGGGGTATCCTCGTCACTGCTGATGGCTTCTT 439
||| ||||||||||||| |||||| | ||| ||| | ||| ||| |||||||| |||
Sbjct 3025 AGTGTCATGTCCCAAGACTCTCATGACAAGGG-TATTCGCGTTGCTGTTGATGGCTACTT 3083
Query 440 CACTT-CACACGAGAGACCTGCAAGGAAATTCACACAAAACTTCT-TTCTTGCTCCCCAA 497
||||| || ||||||| ||||||||||| ||||||||||||||| || |||||||||||
Sbjct 3084 CACTTTCA-ACGAGAGGCCTGCAAGGAACTTCACACAAAACTTCACTT-TTGCTCCCCAA 3141
Query 498 GAAAATGAC-TACTTTGCTTT-GACCGACATGTTCAAGTTTGTTGATATACCCGAGGCTA 555
||||| | | | ||||| ||| ||| ||||||||||||||||||| |||||||||||||
Sbjct 3142 GAAAAAGGCCT-CTTTG-TTTCGACTGACATGTTCAAGTTTGTTGGCATACCCGAGGCTA 3199
Query 556 ATG 558
|||
Sbjct 3200 ATG 3202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 188978874281
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5