BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928634
Length=2081
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41820.1 | Symbols: RGTA2, ATRGTA2 | RAB geranylgeranyl tran... 1958 0.0
AT4G24490.1 | Symbols: RGTA1, ATRGTA1 | RAB geranylgeranyl tran... 1639 0.0
> AT5G41820.1 | Symbols: RGTA2, ATRGTA2 | RAB geranylgeranyl transferase
alpha subunit 2 | chr5:16740804-16743433 FORWARD LENGTH=2064
Length=2064
Score = 1958 bits (1060), Expect = 0.0
Identities = 1482/1670 (89%), Gaps = 91/1670 (5%)
Strand=Plus/Plus
Query 428 CAGGAACTTTCACGCTTGGAACTATCGCAGGTTTGTCT-TGGAGCTAACCAAGACGCCAC 486
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||
Sbjct 447 CAGGAACTTTCACGCTTGGAACTATCGCAGGTTTGT-TGTGGAGCTAACCAAGACGTCAG 505
Query 487 AACAGGATGAGTTGCACTATACAACTGATATGATCAATGATGTTAGTTTCAGCAACTATT 546
|| ||||||||||||| ||||||||||||||||||| |||| ||||||||| || |||||
Sbjct 506 AAGAGGATGAGTTGCAGTATACAACTGATATGATCAGTGATATTAGTTTCACCATCTATT 565
Query 547 CTGCGTGGCACAATCGTAGTGAACTTCTTTCAAGTTTAGTCGCAAAAAAGGCTGATGGGT 606
|||||||||| ||||||||| |||| ||||||||||||| |||||||||||||||||||
Sbjct 566 CTGCGTGGCATTATCGTAGTGTACTTGTTTCAAGTTTAGTGGCAAAAAAGGCTGATGGGT 625
Query 607 TTATGCCAAAGGAAACGATTCGTCGTGAATTAGATTATGTACATAATGCTATTTTTACG- 665
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 626 TTATGCCAAAGGAAACGATTCGTCGTGAATTGGATTATGTACATAGTGCTATTTTTACGT 685
Query 666 GACGAAGATG-ACCAAAGT-GCTTGGTTTTATTATCTTTGGCTTCTTGATCAAACTGTTA 723
| ||||| | | |||||| || ||||||||||| ||||||||||||||||| |||||||
Sbjct 686 TA-GAAGA-GAAACAAAGTGGC-TGGTTTTATTACCTTTGGCTTCTTGATCAGACTGTTA 742
Query 724 AAATGGAGACTCCTCTTCGCACTTCCTCGTGGCCTTCAGATGGTTCCATTATCATCCTAT 783
||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 743 AAATGGAGATTCCTCTTCGCTTTTCCTCGTGGCCTTCAGATGGTTCCATTATCATTCTAT 802
Query 784 CTGGACCTGGGTGCTTCAATGGCTCTTCTTCTTCTTCTAAGTTCACTACTTTCTGTTCCG 843
||||||||| |||||||||| |||||||||| || ||||||| ||||||||||||||||
Sbjct 803 CTGGACCTGACTGCTTCAATGCCTCTTCTTCTACTACTAAGTTGACTACTTTCTGTTCCG 862
Query 844 AGTCTGGTTCTTTTCCACTGATTCTTTACTTTGACCAAGCCGTCAGTGGAGTAAGCTCGT 903
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 863 AGTCTGGTTCTTTTCCACTGATTCTTTACTTTGACCAAGCCGTAAGTGGAGTAAGCTCGT 922
Query 904 CTACTGTTACTATT-GATTCTGAACTACAAGGAAATCAGGACCTTGTTTGGGAACCAGTT 962
| |||||||||||| || |||||||| | || | |||||||||||||||||||||
Sbjct 923 CAACTGTTACTATTGGA-TCTGAACT-C-----AA--A-GACCTTGTTTGGGAACCAGTT 972
Query 963 TCGGAT---AAAAACTCTCAACT-G--TCTTGTGTATGGGTTGCTCGTCTGAAATTTGAC 1016
|||||| |||||||||||| | | |||||||| ||||||||||||||||||||||||
Sbjct 973 TCGGATAAGAAAAACTCTCAAGTGGACTCTTGTGTTTGGGTTGCTCGTCTGAAATTTGAC 1032
Query 1017 AGT-GCTGAACCTTGC-TT--TCGCAAGGAAAACAAAGTGAAGGTCAGCCTTGGGAAGTC 1072
|| | ||||||||| || ||| ||||||| |||||| |||||||||||| | |
Sbjct 1033 TGTAG-AGAACCTTGCTTTAGTCGTAAGGAAACCAAAGTCAAGGTCAGCCTT--G--G-- 1085
Query 1073 TCAAGGAATTGTTTCTTCCAGGGGATGTTACTTGAGCGCTCCTTATGAGTTTGTATTTAC 1132
||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||
Sbjct 1086 ---AGGAATTGTTTCTTCCATGGGATGTAACTTGACCGCTCCTTATGAGTTTGTATTTAC 1142
Query 1133 AGTGCATATTCATGACACTGTCG--G-AGA---G-C-C-ACAAGAAGGCATTGTTTTGTG 1183
| ||| ||||||||||||||||| | ||| | | | ||||||| ||||||||| ||
Sbjct 1143 ACTGCGTATTCATGACACTGTCGAAGTAGAGTTGTCACAACAAGAAAGCATTGTTTCATG 1202
Query 1184 GACGGATGGTTTTGACAATT-GG--G---ATGCACAGTCGAAGGATTTGAATTCTCTTAT 1237
|||||||||||||||||||| || | |||||| |||||| ||||||||||||| | |
Sbjct 1203 GACGGATGGTTTTGACAATTGGGATGATAATGCACTGTCGAATGATTTGAATTCTC-T-T 1260
Query 1238 CACCTCGGATCAGTTAAACGCTGATACAGGTTTTGAGTGGCGTAAGCAAGCTATAAAGAT 1297
| | | | | |||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1261 -A-C-C-G--C-CTTAAACGCTGATACGGGTTTTGAGTGGCGTAAGAAAGCTATAAAGAT 1313
Query 1298 AGAGATTGAA-TGTTTTCGTGA-TTTGCATGACAGCAAATTTGGAAAGCTCATTCTTGCA 1355
|||||||||| | ||||||| | ||||| |||||||||| ||||||||||||||||||||
Sbjct 1314 AGAGATTGAACT-TTTTCGT-ACTTTGCCTGACAGCAAAATTGGAAAGCTCATTCTTGCA 1371
Query 1356 AGGCTTTTGATGGCTGAGGAAACTATGATCTCGGATGATGCTGTTAAGGGTGTCCATTAT 1415
|||||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct 1372 AGGCTTTTGATGGCTGAGGAAACTATGATCTC-----A-------AATGGTGTCCATTAT 1419
Query 1416 AATGAAATCCTCCAGCTGTATAAGGATCTGATGGCTCTTAATTCTTCGCATGACCAGTAC 1475
|| ||||||||||| |||||||| ||||| ||||||||| |||||| |||| ||||||||
Sbjct 1420 AAAGAAATCCTCCAACTGTATAACGATCTAATGGCTCTTGATTCTTGGCATAACCAGTAC 1479
Query 1476 TACAAGGATGAGCACAGCGTAGCTCTTCTCCACAAGGTGACTTCAAGTACCGAATCCCTG 1535
|||||||||||||||||||||||||| ||||||||||||||||||| || |||||| ||
Sbjct 1480 TACAAGGATGAGCACAGCGTAGCTCTAATCCACAAGGTGACTTCAAGAACTGAATCCATG 1539
Query 1536 TCCAGACGCCTCTTTCTGTACAGGAATATGAACAATATTGTATGTCTAAGGCTCAATAAC 1595
||||||| |||||||| |||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1540 TCCAGACACCTCTTTCGGTACAGGAATATGAACAATATTATATGTTTAAGGCTCAATAAC 1599
Query 1596 TTAACATTATCTCGGATAGCCGCTGTCGAGAAGTTTCTATTTGTCCAAATGTTAGATCTC 1655
|||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1600 TTAACACTATCTCGGATAGCCGCGGTCGAGAAGTTGCTATTTGTCCAAATGTTAGATCTC 1659
Query 1656 AGTCACAATGAGCTTCATTCCGCTGAAGGATTGGAGGCGATGCAGCTTCTCTGTTGCCTA 1715
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1660 AGTCACAATGAGCTTCATTCAGCTGAAGGATTGGAGGCGATGCAGCTTCTCTGTTGCCTA 1719
Query 1716 AATCTGTGTCACAACAGAATCAGGAGCTTTTCAGCCCTTGATTCTCTAAGACATCTGAAG 1775
|||||| |||||||||||||||||||||||||||| ||||| ||| |||||||||| |||
Sbjct 1720 AATCTGAGTCACAACAGAATCAGGAGCTTTTCAGCGCTTGACTCTTTAAGACATCTTAAG 1779
Query 1776 CAGCTTAGAGTGTTGGATGTTTCACATAACGACAT--G-GGCGGCAAGCACCCAGTGGAC 1832
|||||||||||||||||||||||||||||| |||| | || || || | |||||| |||
Sbjct 1780 CAGCTTAGAGTGTTGGATGTTTCACATAACCACATCTGTGG-GG-AA-CTCCCAGTAGAC 1836
Query 1833 ACAACAAGGTACCTCTGTTCTTGGCCGCTCTCTAATTCGGCTGAAATTGGAAGACAGGTG 1892
|||||||||||||| ||||||| ||||||||||||||||| ||||| ||||||| |||||
Sbjct 1837 ACAACAAGGTACCTTTGTTCTTCGCCGCTCTCTAATTCGGGTGAAACTGGAAGAGAGGTG 1896
Query 1893 CCTTGTAAATACTGGGATGCGTATTTGGTGCTTAGAGATTTGAAGAAACTGAAGCAGTTA 1952
||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1897 CCTAATAAATACCAGGATGCGTATTTGGTGCTTAGAGATTTGATGAAACTGAAGCAGTTA 1956
Query 1953 GATATAATAAGAGGCAACGACCTAAT-T--GCAGGGGAAGAGTTCAGCTCCTTTGTCCGC 2009
||||| || |||||||||||||||| | ||||| ||||||||||||||||||||||||
Sbjct 1957 GATAT--TA-GAGGCAACGACCTAATATTTGCAGGAGAAGAGTTCAGCTCCTTTGTCCGC 2013
Query 2010 CAGGTTCTTCCAAAGCTTGTATGGCTTGATGGCCACAAACTCGCTAGTTA 2059
|||||| | ||||||||||||||||||||||||||||||||| | |||||
Sbjct 2014 CAGGTTGTGCCAAAGCTTGTATGGCTTGATGGCCACAAACTCACAAGTTA 2063
Score = 364 bits (197), Expect = 1e-99
Identities = 348/416 (84%), Gaps = 29/416 (7%)
Strand=Plus/Plus
Query 21 ATGCACGGTCGTCCGAGGA-AGGCGGCTTCGAAGCCAGA--AGCCTCGGCTGCTAAAG-C 76
|||||||||||| || || ||| || | |||| ||||| || | | || ||||||| |
Sbjct 1 ATGCACGGTCGTAAGA-GAGAGGAGGATCCGAATCCAGAGGAGAC-C-GCAGCTAAAGCC 57
Query 77 CTTAAAGCTCCGGTCGGTCCAGTCCCAGTTCATGTCCAATCACCATCGAAAGATTTACAC 136
||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 58 CTT-GAGCTCCGGTCTCTCCAGTCCCAGTTCATGTCCAATCACCATCAAAAGATTTACAC 116
Query 137 ACAGGAAGCAATTCAATTAAGCGCGAAGCTTCTAGCAATCAATCCGGAGGCCTACACGGC 196
| |||||||||||||||||||||||||||||||| || |||||| ||| |||||| ||
Sbjct 117 AAAGGAAGCAATTCAATTAAGCGCGAAGCTTCTAATAACCAATCCAGAGTTCTACACTGC 176
Query 197 TTGGAACTATCGGAAGCTCGCCGTCGAGGATAACCTTTCCCGAATCGACGACTCTGATCC 256
||||||||||| |||||||||| ||||| | || | ||| ||| |||||||||||
Sbjct 177 TTGGAACTATCCGAAGCTCGCCTTCGAG--TC-CCGA-CTCGA--CGAGGACTCTGATCC 230
Query 257 AAGCTTGGTCAACTCAATTCTCAATGAAGAACTTGAAGTCGTAGCAAT-TGCCCTTCGGC 315
||||||||||||||||||| || |||||||||| | ||||||| ||| |||| || ||
Sbjct 231 AAGCTTGGTCAACTCAATTATCGATGAAGAACTAGGAGTCGTA-CAAAATGCC-TT-GGA 287
Query 316 GA--AATCTCAAGTCCTATGGGGCTTGGTATCATCGAAAGTGGGTTTTGAGTAAA---GG 370
|| ||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 288 GAGGAATGTCAAGTCATATGGGGCTTGGTATCATCGAAAGTGGGTTTTGAGTAAAAAAGG 347
Query 371 GCATT-----CC-TCCTTAGAAAAGGAATTGCAACTTTTGAATAAATATCAAAAGC 420
||||| || ||||||||||| ||||||||||||||||| | ||||||||||
Sbjct 348 GCATTATTATCCCTCCTTAGAAAATGAATTGCAACTTTTGAACGACTATCAAAAGC 403
> AT4G24490.1 | Symbols: RGTA1, ATRGTA1 | RAB geranylgeranyl transferase
alpha subunit 1 | chr4:12655059-12658336 REVERSE LENGTH=2427
Length=2427
Score = 1639 bits (887), Expect = 0.0
Identities = 1714/2094 (82%), Gaps = 134/2094 (6%)
Strand=Plus/Plus
Query 15 AGAAGAATGCACGGTCGTCCGAGGAAGGCGGCTTCGAAGCC-----A-GAAGC--C-TCG 65
|||||||||||||||||||| ||||| ||||| ||||| | ||||| | ||
Sbjct 114 AGAAGAATGCACGGTCGTCCAAGGAA---TGCTTCTAAGCCAGAAGAGGAAGCAGCTTCA 170
Query 66 GCTGCTAAAGCCT-TAAAGCTCCGGTCGGTCCAGTCCCAGTTCATGTCCAATCACCATCG 124
|||||||||| || | |||| || || ||||||| ||||| ||| | ||||| || ||
Sbjct 171 GCTGCTAAAG-CTGTTCAGCTTCGCTCTCTCCAGTCTCAGTTTATGACGAATCATCA-CG 228
Query 125 A-AAGATTTACA-CACAGGAAGCAATTCAATTAAGCGCGAAGCTTCTAGCAATCAATCCG 182
| || ||||| | || | ||||| ||| | |||||| |||||||||||| ||||||||||
Sbjct 229 ATAAAATTTATACCA-ATGAAGCTATTGAGTTAAGCACGAAGCTTCTAGAAATCAATCCG 287
Query 183 GAGGCCTACACGGCTTGGAACTATCGGAAGCTCGCCGTCGAGGATAACCTTTCCCGAATC 242
||||| ||||| || |||||||| |||||||| || || |||||| |||| || ||||
Sbjct 288 GAGGCGTACACCGCATGGAACTACCGGAAGCTTGCTGTGGAGGATCGCCTTGCCAGAATT 347
Query 243 GACGACTCTGATCCAAGCTTGGTCAACTCAATTCTCAATGAAGAACTTGA-AGTCGTAGC 301
|| | | ||||||||| |||||||| | ||||||| ||||||||| | | ||| ||||
Sbjct 348 GA-G-C-CTGATCCAAACTTGGTCAGCGCAATTCTTGATGAAGAAC-TCAGAGTGGTAGA 403
Query 302 AATTGCCCTT-CGGCGA-AATCTCAAGTCCTATGGGGCTTGGTATCATCGAAAGTGGGTT 359
|| || | || ||| | ||| ||||||||||||| |||||| |||||||||||||||||
Sbjct 404 AAGTG-CTTTGAGGC-AGAATTTCAAGTCCTATGGTGCTTGGCATCATCGAAAGTGGGTT 461
Query 360 TTGAGTAAAGGGCATTCCTCCTTAGAAAAGGAATTGCA-ACTTTTG-AATAAATATCAA- 416
||||||||||||||||| ||| ||| || |||||| | ||||||| || |||| || |
Sbjct 462 TTGAGTAAAGGGCATTCATCCGTAGGGAATGAATTG-AGACTTTTGGAA-AAAT-TCCAG 518
Query 417 AAGCTCGATCTC-AGGAACTTTCACGCTTGGAACTATCGCAGGTTTGTCT-TGGAGCTAA 474
||||| ||| || || || ||||| ||||||||||||||||||||||| | | |||||||
Sbjct 519 AAGCTGGAT-TCCAGAAATTTTCATGCTTGGAACTATCGCAGGTTTGT-TGTAGAGCTAA 576
Query 475 CCAAGACGC-CACAACAGGATGAGTTGCACTATACA-ACTGATATGATCAATGATGTTAG 532
|||| | | || |||||||||||||||| |||||| | ||||||||||||| | |
Sbjct 577 CCAACA-GATCAGAACAGGATGAGTTGCAGTATACAGA-TGATATGATCAATAACA--A- 631
Query 533 TTTCAGCAACTATTCTGCGTGGCACAATCGTAGTGAACTTCTTTCAAGTTTAGTCG-CAA 591
|||||||||||||||||| ||||| |||||||||| |||||| |||||||| || | ||
Sbjct 632 TTTCAGCAACTATTCTGCATGGCATAATCGTAGTGTACTTCTATCAAGTTT-GTTGGCAC 690
Query 592 AAAAGGCTGATGGGTTTATGCCAAAGG-AAACGATTCGTCGTG-AAT-TAGA-TTATGTA 647
|||| |||||||||||||||||||| ||| ||||| | | | ||| | || || ||||
Sbjct 691 AAAATGCTGATGGGTTTATGCCAAATATAAA-GATTCCT-GAGGAATAT-GACTT-TGTA 746
Query 648 CATAATGCTATTTTTACGGA-CGAAGATGACCAAAGTG-CTTGGTTTTATTATCTTTGGC 705
||| |||||||||||||| | | ||||||||||||| || |||||||| |||||||||
Sbjct 747 CATTCGGCTATTTTTACGGAACCA-GATGACCAAAGTGGCT-GGTTTTATCATCTTTGGC 804
Query 706 TTCTTGATCAAACTGTTAAAATGGAGACTCCTCTTCGCACTTCCTCGTGGCCTTCAGATG 765
||||||| |||||| |||| ||||||||||||||| ||||||||| ||||||||| |||
Sbjct 805 TTCTTGACCAAACTCTTAATGTGGAGACTCCTCTTCTCACTTCCTCATGGCCTTCACATG 864
Query 766 GTTCCATTATCATCCTATCTGGACCTGGGTGCTTCAATGGCTCTTCTTCTTCTTCTAAGT 825
|||| | |||||| || |||||| |||||||||| | ||||||||| ||| | ||
Sbjct 865 GTTCAAGTATCATTCTGTCTGGAGCTGGGTGCTTGAGTGGCTCTTCATCTA-T-----GT 918
Query 826 TCACTACTTTCTGTTCCGAGTCTGGTTCTTTTCCACTGATTCTTTACTTTGACCAAGCCG 885
|||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 919 TCACTACTTTTTGTTCTGAGTCGGGTTCTTTTCCACTGATTCTCTACTTTGACCAAGCTG 978
Query 886 TCAGTGGAGTAAGCTCGTCTACTGTTACTATTGATTCTGAACTACAAGGAAATC-AGGAC 944
| ||||||||||||| ||||||||||| ||||||||||||||| ||||||| | ||| |
Sbjct 979 TTGGTGGAGTAAGCTCATCTACTGTTACAATTGATTCTGAACTAAAAGGAAA-CGAGGGC 1037
Query 945 CTTGTTTGGGAACCAGTTTCGGATAAAAACTCTCAACTGTCTTGTGTATGGGTTGCTCGT 1004
||||||||||||||| || || | ||||| ||||| |||| ||||||||||||||||||
Sbjct 1038 CTTGTTTGGGAACCAATTCCGAACAAAAATTCTCAGGTGTCCTGTGTATGGGTTGCTCGT 1097
Query 1005 CTGAAATTTGACAGTGCTGAACCTTGCTTTCGCAAGGAAAACAAAGTGAAGGTCAGCCTT 1064
||||||| || |||| | || |||||| | || | |||||||||| |||| ||
Sbjct 1098 CTGAAATATGTCAGTTCAGATCCTTGC----G-AAT-A---CAAAGTGAAGATCAGAGTT 1148
Query 1065 GGGAAGTCTCAAGGAATTGTTTCTTCCAGGGGATGTTACTTGAGCGCTCCTTATGAGTTT 1124
||||| |||| |||||| ||||||||||| |||| | |||| | ||| ||||||||||||
Sbjct 1149 GGGAACTCTCCAGGAATCGTTTCTTCCAGAGGATATAACTTCAACGCACCTTATGAGTTT 1208
Query 1125 GTATTTACAGTGCATATTCATGACACTGTCGGAGAGCCACAAGAAGGCATTGTTTTGTGG 1184
|| ||||||| ||| ||||||| || |||| ||| | |||||||||||||||| |||
Sbjct 1209 GTCTTTACAGCCCATGTTCATGATACCGTCGAAGATTCTCAAGAAGGCATTGTTTCATGG 1268
Query 1185 ACGGATGGTTTTGACAATTGGGATGC-ACAGTCGAAGGATTTGAATTCTCTTATCACCTC 1243
|||||||| ||||| | ||||||||| | |||| |||||||||||||||||| ||||||
Sbjct 1269 ACGGATGGATTTGATATTTGGGATGCGA-AGTCAAAGGATTTGAATTCTCTTGTCACCTT 1327
Query 1244 GGATCAGTTAAACGCTGATACAGG-TTTTGAGTGGCGTAAGCAAGCTATAAAGA-TAGAG 1301
||||| |||||| ||||| | || |||| | |||||| || |||||||| | | |||
Sbjct 1328 GGATCGGTTAAATGCTGAGAT-GGATTTTAAATGGCGTCAGGAAGCTATAGATTCT-GAG 1385
Query 1302 ATTGAATGTTTTCG-TGATT-TGCATGACAGCAAATTTGGAAAGCTCATTCTTGCAAGGC 1359
|||||||||| || | || ||| |||||||||| |||||||||||| |||||||||||
Sbjct 1386 GTTGAATGTTT-CGGT-ATACTGCCTGACAGCAAAATTGGAAAGCTCACTCTTGCAAGGC 1443
Query 1360 TTTTGATGGCT-GAGGAAACTATGATCTCGGATGATGCTGTTAAGGGTGTCCATTAT-AA 1417
||||||||||| | | || ||||| | |||||||||||||| |||||||| || ||| ||
Sbjct 1444 TTTTGATGGCTCGTG-AAGCTATGGTATCGGATGATGCTGTCAAGGGTGTTCACTATGAA 1502
Query 1418 TGAAATCCTCCAGCTGTATAAGGATCTGATGGCTCTTAATTCTTCGCA-TGACCAGTACT 1476
|||||||| ||||||||||| ||| ||||||| || ||||||| || | |||||||||
Sbjct 1503 -GAAATCCTTCAGCTGTATAACGATTTGATGGCGCTGGATTCTTCACACT-ACCAGTACT 1560
Query 1477 ACAAGGATGAGCACAGCGTAGCTCTTCTCCACAAGGTGACTTCAAGTACCGAATCCCTGT 1536
||||||||||||||||| |||| |||||||||||||||||||||| | ||||| |||
Sbjct 1561 ACAAGGATGAGCACAGCAAAGCTTTTCTCCACAAGGTGACTTCAAGCAGTGAATCTTTGT 1620
Query 1537 CCAGACGCCTCTTT-CTG-TACAGGAATATGAACAATATTGTATGTCTAAGGCTCAATAA 1594
| |||| ||| ||| | | || ||| ||||||||||| ||||||||||| |||| |||||
Sbjct 1621 CAAGACACCT-TTTGC-GATATAGGGATATGAACAATCTTGTATGTCTACGGCTAAATAA 1678
Query 1595 CTTAACATTATCTCGGATAGCCGCTGTCGAGAAGTTTCTATTTGTCCAAATGTTAGATCT 1654
|||| || |||||||||||||| |||| |||||||| || ||||||||||||||||| ||
Sbjct 1679 CTTATCACTATCTCGGATAGCCTCTGTTGAGAAGTTGCTGTTTGTCCAAATGTTAGACCT 1738
Query 1655 CAGTCACAATGAGCTTCATTCCGCTGAAGGATTGGAGGCGATGCAGCTTCTCTGTTGCCT 1714
||||||||||||||||||||| |||||||||||||||| ||||| ||||||| ||| ||
Sbjct 1739 TAGTCACAATGAGCTTCATTCCACTGAAGGATTGGAGGCAATGCAACTTCTCTCTTGTCT 1798
Query 1715 AAATCTGTGTCACAACAGAATCAGGAGCTTTTCAGCCCTTGATTCTCTAAGACATCTGAA 1774
||||||| |||||||||||||| |||| |||||||| || || |||||||||||| ||||
Sbjct 1799 AAATCTGAGTCACAACAGAATCCGGAGTTTTTCAGCGCTGGACTCTCTAAGACATGTGAA 1858
Query 1775 GCAGCTTAGAGTGTTGGATGTTTCACATAACGACATGGGCGGCAAGCACCCAGTGGACAC 1834
|||||| | |||||||||||||||||||||| |||| ||| |||||| ||||||||||
Sbjct 1859 GCAGCTGAAAGTGTTGGATGTTTCACATAACCACATTGGC---AAGCACTCAGTGGACAC 1915
Query 1835 AACAAGGTACCTCTGTTCTTGGCCGCTCTCTAATTC-G-GCTG----A--A--AT-T-GG 1882
||| || ||||| ||||||| |||||||||||||| | | || | | || | ||
Sbjct 1916 AACTAGATACCTTTGTTCTTCACCGCTCTCTAATTCAGAGTTGGGTCAGGATGATGTAGG 1975
Query 1883 AAGACAGG-TGCCT---T-G-T-A--AA-TACTGGGATGCGTATTTG-GTGCTTAG-AGA 1930
|| |||| | ||| | | | | || |||||||||||||||| | ||| ||| |||
Sbjct 1976 AAAACAGAAT-CCTGGATTGGTTACGAAGTACTGGGATGCGTATT-GCGTG-TTAACAGA 2032
Query 1931 TTTGAAGAAACTGAAGCAGTTAGATATAATAAGAGGCAACGACCTAATTGCAGGGGAAGA 1990
|||||| ||||| |||||||||||| | || || || |||||||||||| ||
Sbjct 2033 TTTGAAT---CTGAAACAGTTAGATATAGCAGGA---AATGA---AATTGCAGGGGAGGA 2083
Query 1991 GTTCAGCTCCTTTGTCCGCCAGGTTCTTCCAAAGCTTGTATGGCTTGATGGCCA 2044
|||||||| ||||||| ||||||| | ||||||||||||||||| ||||||||
Sbjct 2084 ATTCAGCTCTTTTGTCCTCCAGGTTGTCCCAAAGCTTGTATGGCTCGATGGCCA 2137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103162119975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5