BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928651
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09740.1 | Symbols: SYP71, ATSYP71 | syntaxin of plants 71 |... 1690 0.0
> AT3G09740.1 | Symbols: SYP71, ATSYP71 | syntaxin of plants 71
| chr3:2989431-2991661 FORWARD LENGTH=1292
Length=1292
Score = 1690 bits (915), Expect = 0.0
Identities = 986/1021 (97%), Gaps = 2/1021 (0%)
Strand=Plus/Plus
Query 1 ATTC-AAATTTCACAAAATAAAGTCTTCTTCCTCTTCGAATCAGAGATTTTCTCCTTCTT 59
|||| |||||||||||| ||||||||||||||||| ||||||||||||| |||||||| |
Sbjct 84 ATTCAAAATTTCACAAATTAAAGTCTTCTTCCTCTCCGAATCAGAGATTGTCTCCTTC-T 142
Query 60 TAGCTCAGATCTGGGAGCTTCTGGTGATTGATTTGGAAGAAGATGACTGTGATCGATATT 119
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 143 TAGCTCAGATCTGGGAGCTTCTTGTGATAGATTTGGAAGAAGATGACTGTGATCGATATT 202
Query 120 CTGACTAGAGTTGACTCGATCTGTAAGAAGTACGACAAGTACGATGTCGACAAACAGCGT 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 CTGACTAGAGTTGACTCGATCTGTAAGAAGTACGACAAGTACGATGTCGACAAACAGCGG 262
Query 180 GAGGCCAATATCTCCGGCGATGATGCCTTTGCTCGTCTCTATGGAGCTTTCGAAACCCAA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 GAGGCCAATATCTCCGGCGATGATGCCTTTGCTCGTCTCTATGGAGCTTTCGAAACCCAA 322
Query 240 ATCGAGACCGCTCTCGAGAAAGCTGAACTTGTTACGAAGGAGAAAAATAGAGCTGCTGCT 299
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 323 ATCGAGACCGCTCTCGAGAAAGCTGAACTTGTTACGAAGGAGAAAAACAGGGCTGCTGCT 382
Query 300 GTTGCAATGAATGCTGAGATCCGCCGGACCAAGGCTCGATTGTCAGAGGAAGTTCCCAAG 359
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 383 GTTGCAATGAATGCTGAGATCCGCCGGACCAAGGCACGATTGTCAGAGGAAGTTCCCAAG 442
Query 360 TTGCAGAGACTTGCTGTCAAGCGGGTTAAGGGCCTTACAACCGAAGAGCTTGCTGCGAGA 419
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 TTGCAAAGACTTGCTGTCAAGCGGGTTAAGGGCCTTACAACCGAAGAGCTTGCTGCGAGA 502
Query 420 AATGATTTAGTGCTCGCTCTACCAGCCAGGATTGAAGCCATACCTGATGGGACAGCAGGT 479
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 503 AATGATTTGGTGCTCGCTCTTCCAGCCAGGATTGAAGCCATACCTGATGGGACAGCAGGT 562
Query 480 GGCCCTAAAAACACTAGTGGTTGGACTCCCTCCTCAACAACATCTCGTCCTGATATCAAA 539
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 563 GGCCCTAAAAGCACTAGTGCTTGGACTCCCTCCTCAACAACATCTCGTCCTGATATCAAA 622
Query 540 TTTGATTCAGATGGGCGTTTTGATGATGATTACTTTCAAGAATCACATGAATCTAGCCAA 599
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 623 TTTGATTCAGATGGGCGTTTTGACGATGATTACTTTCAAGAATCAAATGAATCTAGCCAA 682
Query 600 TTCAGACAGGAGTATGAGATGCGGAAAATAAAACAGGAACAAGGTCTTGACATGATCTCT 659
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 TTCAGGCAGGAGTATGAGATGCGGAAAATAAAACAGGAACAAGGTCTTGACATGATCTCC 742
Query 660 GAAGGGTTAGATGCTTTGAAGAACATGGCGTCTGATATGAACGAGGAACTGGATAGACAA 719
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 743 GAAGGGTTAGATGCTTTGAAGAACATGGCTTCTGATATGAACGAGGAACTGGATAGACAA 802
Query 720 GTTCCACTGATGGATGAAATCGACACAAAGGTGGACAGAGCAACCTCGGATCTTAAAAAC 779
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 803 GTTCCACTGATGGATGAAATCGACACAAAGGTGGACAGAGCAACCTCCGATCTTAAGAAC 862
Query 780 ACCAATGTCAGACTTAAAGATACCGTGAACCAGCTGAGATCAAGCCGGAACTTCTGTATC 839
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 863 ACCAATGTTAGACTTAAAGATACCGTGAACCAGCTGAGATCTAGCCGGAACTTCTGTATC 922
Query 840 GATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAATGTACTGAAG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 GATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAATGTACTGAAG 982
Query 900 TGATGAGATGAACACGACGAAAGGACCCAGTAGTACTTATCACCCGAGTCAGTGTCCAGT 959
| ||||||||||| | ||||||||||||| ||||||||||||||||||||| | ||||||
Sbjct 983 TAATGAGATGAACCCTACGAAAGGACCCATTAGTACTTATCACCCGAGTCAATATCCAGT 1042
Query 960 GTGTGCTTGTGTCTTAATCTTCTACTCTGATATTTCTGCGAGAGTTTCTTCCTAATGTCA 1019
|||||||||||||||| |||||| ||||||||||||| ||||||||||||| ||||||||
Sbjct 1043 GTGTGCTTGTGTCTTACTCTTCTTCTCTGATATTTCTACGAGAGTTTCTTCTTAATGTCA 1102
Query 1020 A 1020
|
Sbjct 1103 A 1103
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49982976265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5