BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928652
Length=512
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03460.1 | Symbols: | Galactose oxidase/kelch repeat superf... 124 6e-28
AT3G09915.1 | Symbols: | pseudogene, hypothetical protein | ch... 91.6 6e-18
AT1G61542.1 | Symbols: | pseudogenen of kelch repeat-containin... 69.4 3e-11
AT1G61550.1 | Symbols: | S-locus lectin protein kinase family ... 69.4 3e-11
> AT2G03460.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr2:1043621-1044992 REVERSE LENGTH=1280
Length=1280
Score = 124 bits (67), Expect = 6e-28
Identities = 226/300 (75%), Gaps = 21/300 (7%)
Strand=Plus/Plus
Query 143 CTTATTGTGAGATAGAGAATGTTTTGTACT-TTGCTGCTCACAGAGCGCTCATG-TGGTA 200
||| ||| |||||| ||||||||||||||| ||| | |||| ||| | ||| | |||||
Sbjct 817 CTTCTTGCGAGATACAGAATGTTTTGTACTCTTG-TACTCATGGAGTGTTCA-GATGGTA 874
Query 201 TGACTTTCAGGTAAAAAACTGGAGAGATTTGAAGGGTTTGGTAGGACTACCCAAATTCCC 260
|||| | | | || | |||||||||||||||||||||||||||||||| | |||
Sbjct 875 TGACACTAACGCAATGATGTGGAGAGATTTGAAGGGTTTGGTAGGACTACCTATGTTCGG 934
Query 261 TCCTC-TCGCTCAGAT-T-A-GATTGGCAGATTATGGTGGAAAGAT-AGTGGCTATGTGG 315
| || | || || || | | | ||||| |||||||| ||||| || | || | |||||
Sbjct 935 TTCTGGT-GC-CA-ATGTTAAG-TTGGCTGATTATGGAGGAAA-ATTAACGGTTTTGTGG 989
Query 316 GACGTTAATGTTTCATA-TGGTA-ACG-GTTC-CAGCTATAAGACGA-GAATTTGGTGTG 370
|| | | ||| | | | || || | | | ||||||||| || || || ||||||
Sbjct 990 GAGGAGGA-GTTGCCTTCTCGTGGACCTGATAGCGGCTATAAGAAGATGA-TTCGGTGTG 1047
Query 371 CGGAGATTTCGCTTGAAAGACTCAATAGTTGTGAAATTTGGGGGAAAGTTGAGTGGGTTG 430
| |||||| |||||||||| | ||| ||||||||||||||||||| ||||||||| |||
Sbjct 1048 CAGAGATTGCGCTTGAAAGGCGCAAAAGTTGTGAAATTTGGGGGATTGTTGAGTGGTTTG 1107
> AT3G09915.1 | Symbols: | pseudogene, hypothetical protein |
chr3:3039015-3040186 REVERSE LENGTH=1172
Length=1172
Score = 91.6 bits (49), Expect = 6e-18
Identities = 272/374 (73%), Gaps = 37/374 (10%)
Strand=Plus/Plus
Query 128 ATATGTGTTCACATTCTTATTGTGAGATAGA-GAATGTTTTGTACTTTGCTGCTCA-CAG 185
||||| ||||| ||||||||||||||||||| | || ||||||||| || | | | |||
Sbjct 822 ATATGCGTTCAGATTCTTATTGTGAGATAGATG-ATATTTTGTACTCTGTTTAT-AGCAG 879
Query 186 AGCGCTCATGTGGTATGACTTTCAGGTAAAAAACTGGAGAGATTTGAAGGGTTTGGTAGG 245
| || | || ||||||||| | ||| || | |||||| ||||| |||| | ||||
Sbjct 880 AACGGTTATATGGTATGACACTGAGGCAAGCAGGTGGAGATATTTGGAGGG-CT--TAGG 936
Query 246 ACTACCCAAATTCCCTCCTCTCGCTCAGATTAGATT-GGCAGATTATGGTGGAAAGATAG 304
|| || | || |||||| | | | || ||| || | ||| |||||| |||
Sbjct 937 ACAACTTACGTT---TCCTCTTGGT--GCTTCTATTAGG--GCTTA----GGAAAGTTAG 985
Query 305 TGGCTATGTGGGACGTTAATGTTTC-ATATGG--TAAC-GGTTCCAG-CTATAAGACG-A 358
|| | ||||||||| || || | ||||| | || ||| | | |||||||| | |
Sbjct 986 CGGTTTTGTGGGACGAGGAT-TTGCTTTATGGTTTGACTAGTTTC-GTCTATAAGAAGAA 1043
Query 359 GAATTTGGTGTGCGGAGATTTCGCTTGAAAGACTCAATAGTTGTGAAA-TTTGGGGGAAA 417
| |||||||||||||||||||||||||||||| ||| ||||| |||| ||| ||| ||
Sbjct 1044 G-ATTTGGTGTGCGGAGATTTCGCTTGAAAGAAGCAAAAGTTGCGAAAGTTTTGGG-AA- 1100
Query 418 GTTGAGTGGGTTGAT-ATTATGCATACAAT-CTTAGACTCATTT-ATACTCGTGAAGGTT 474
||||| ||| ||||| || ||| |||| | | || | || | | | | ||||| |||
Sbjct 1101 GTTGAATGGTTTGATCATG-TGCTTACAGTGCCTAAAGA-ATGTGA-ATTGGTGAAAGTT 1157
Query 475 ATTGCTGCTACTGT 488
|||||||||||||
Sbjct 1158 CTTGCTGCTACTGT 1171
> AT1G61542.1 | Symbols: | pseudogenen of kelch repeat-containing
F-box family protein | chr1:22704010-22704396 FORWARD LENGTH=264
Length=264
Score = 69.4 bits (37), Expect = 3e-11
Identities = 64/76 (84%), Gaps = 5/76 (7%)
Strand=Plus/Plus
Query 361 ATTTGGTGTGCGGAGATTTCGCTTGAAAGAC-TCA--ATAGTTG-TGAAATTTGGGGGAA 416
||||||||||||||||||||||||||||| | | || | | ||| |||||||||||
Sbjct 124 ATTTGGTGTGCGGAGATTTCGCTTGAAAGGCGTGGTGATGGA-GATGAGATTTGGGGGAA 182
Query 417 AGTTGAGTGGGTTGAT 432
|||||||||| |||||
Sbjct 183 AGTTGAGTGGTTTGAT 198
> AT1G61550.1 | Symbols: | S-locus lectin protein kinase family
protein | chr1:22704198-22707826 REVERSE LENGTH=2982
Length=2982
Score = 69.4 bits (37), Expect = 3e-11
Identities = 64/76 (84%), Gaps = 5/76 (7%)
Strand=Plus/Minus
Query 361 ATTTGGTGTGCGGAGATTTCGCTTGAAAGAC-TCA--ATAGTTG-TGAAATTTGGGGGAA 416
||||||||||||||||||||||||||||| | | || | | ||| |||||||||||
Sbjct 2924 ATTTGGTGTGCGGAGATTTCGCTTGAAAGGCGTGGTGATGGA-GATGAGATTTGGGGGAA 2866
Query 417 AGTTGAGTGGGTTGAT 432
|||||||||| |||||
Sbjct 2865 AGTTGAGTGGTTTGAT 2850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24464029589
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5