BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928658
Length=1160
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09810.1 | Symbols: IDH-VI | isocitrate dehydrogenase VI | c... 1975 0.0
AT5G03290.1 | Symbols: IDH-V | isocitrate dehydrogenase V | chr... 1227 0.0
> AT3G09810.1 | Symbols: IDH-VI | isocitrate dehydrogenase VI |
chr3:3008694-3011437 FORWARD LENGTH=1551
Length=1551
Score = 1975 bits (1069), Expect = 0.0
Identities = 1130/1160 (97%), Gaps = 1/1160 (0%)
Strand=Plus/Plus
Query 2 GAGGCTGGAAGCGATGACCATGGCAGCATTTCTCGCGAGACGGCTTATTGGTAACCGATC 61
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||
Sbjct 47 GAGGCTGGAAGCGATGACCATGACAGCATTTCTCGCGAGACGGCTTATCGGTAACGGATC 106
Query 62 GAGCCAGATTCTCGGGACTTCGAGTTCTAGCTCCGGTGCGTTCATTTCCGTTTCTAGGGC 121
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 107 GAGCCAGATTCTCGGGACTTCGAGTTCTAGCTCCGGTCCGTTCATTTCCGTTTCTAGGGC 166
Query 122 TTTCTTCTCCTCCACCACTCCGATCAAAGCAACTCTCTTTCCCGGTGATGGGATCGGTCC 181
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 167 TTTCTTCTCCTCCTCCACTCCGATCAAAGCTACTCTCTTTCCCGGTGATGGGATCGGTCC 226
Query 182 CGAAATCGCTGAATCTGTCAAACAGGTGTTTACTGCCGCTGATGTGACCATTGATTGGGA 241
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 227 CGAAATCGCTGAATCTGTCAAGCAGGTGTTTACTGCCGCTGATGTGGTTATTGATTGGGA 286
Query 242 CGAACAGTTTGTTGGTACTGAAGTAGATCCTAGAACCAATAGTTTCTTGACTTGGGAAAA 301
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 287 CGAACAGTTTGTTGGTACTGAAGTAGATCCTAGAACCAATAGTTTCTTGACATGGGATAA 346
Query 302 TCTTCAATCTGTGCTTAAAAACAAGGTTGGTTTGAAAGGACCAATGGCAACGCCAATTGG 361
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 347 TCTTCAATCTGTGCTTAAAAACAAGGTTGGTTTGAAAGGACCAATGGCTACTCCAATTGG 406
Query 362 AAAGGGTCACCGTTCCTTGAACCTTACTCTTAGGAAAGAGCTGAATTTGTATGCCAATGT 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 AAAGGGTCACCGTTCCTTGAACCTTACTCTTAGGAAAGAGCTGAATTTGTATGCCAATGT 466
Query 422 TAGGCCTTGCTACAGTCTTCCTGGTTACAAAACCCGTTATGATGATGTTGATCTCATTAC 481
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 TAGGCCTTGTTACAGTCTTCCTGGTTACAAAACCCGTTATGATGATGTTGATCTCATTAC 526
Query 482 CATTCGTGAAAACACCGAAGGAGAGTACAGTGGGCTTGAACACCAGGTCGTCAAGGGTGT 541
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 CATTCGTGAGAACACTGAAGGAGAGTACAGTGGGCTTGAACACCAGGTCGTCAAGGGTGT 586
Query 542 GGTGGAAAGTCTTAAAATTATTACCCGTAAGGCGAGTATGAGAGTTGCTGAGTATGCCTT 601
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 587 AGTGGAAAGTCTTAAAATTATTACCCGTAAGGCGAGTATGAGAGTTGCCGAGTATGCCTT 646
Query 602 TCTTTATGCCAAGACTCACGGAAGGAAGAAAGTTTCAGCAATTCATAAAGCCAACATTAT 661
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 647 TCTTTATGCCAAGACTCACGGAAGGAAGAAAGTTTCTGCAATTCACAAAGCCAACATTAT 706
Query 662 GCAGAAAACTGATGGTCTTTTCCTGCAGTGTTGTGATGAGGTTGCTAAGAAGTATCCTGA 721
||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 707 GCAGAAAACTGATGGTCTTTTCCTGCAGTGTTGTGATGAAGTTGCTGCGAAGTATCCTGA 766
Query 722 GATATATTACGAGAAGGTTGTTATTGACAATTGCTGTATGATGCTTGTGAAAAACCCAGC 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 GATATATTACGAGAAGGTTGTTATTGACAATTGCTGTATGATGCTTGTGAAAAACCCAGC 826
Query 782 ACTTTTTGATGTCTTGGTGATGCCAAATCTCTATGGAGATATTATCAGCGATTTGTGTGC 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 ACTTTTTGATGTCTTGGTGATGCCAAATCTCTATGGAGATATTATCAGCGATTTGTGTGC 886
Query 842 CGGACTTGTTGGGGGACTAGGACTGACTCCTAGTATGAATATTGGGGAGGATGGTATTGC 901
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 TGGACTTGTTGGGGGACTAGGACTGACTCCTAGTATGAATATTGGGGAGGATGGTATTGC 946
Query 902 CCTTGCTGAAGCTGTTCACGGCTCTGCACCTGATATTGCTGGAAAGAACCTGGCGAACCC 961
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 947 CCTTGCTGAAGCTGTTCACGGCTCTGCACCTGATATTGCTGGAATGAACCTGGCGAACCC 1006
Query 962 AACAGCTTTGCTACTGAGTGGAGTGATGATGTTGCGGCACCTGAAGCTCAACAAACAAGC 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 AACAGCTTTGCTACTGAGTGGAGTGATGATGTTGCGGCACCTGAAGCTCAACAAACAAGC 1066
Query 1022 AGAGCAAATCCACAGTGCCATCATCAACACAATAGCCGAGGGAAAGTATAGAACTGCTGA 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 AGAGCAAATCCACAGTGCCATCATCAACACAATAGCCGAGGGAAAGTATAGAACTGCTGA 1126
Query 1082 TCTCGGAGGTACCTCAACCACAACAGATTTCACAAAAGCCATCTGTGATCATCTCTAAAC 1141
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 TCTCGGAGGTTCCTCAACTACAACAGATTTCACAAAAGCCATCTGTGATCATCTCTAAAC 1186
Query 1142 ACCCGT-AAAAACCAGAATT 1160
|||||| |||||||| ||||
Sbjct 1187 ACCCGTGAAAAACCATAATT 1206
> AT5G03290.1 | Symbols: IDH-V | isocitrate dehydrogenase V | chr5:793974-796182
FORWARD LENGTH=1437
Length=1437
Score = 1227 bits (664), Expect = 0.0
Identities = 1008/1170 (86%), Gaps = 39/1170 (3%)
Strand=Plus/Plus
Query 5 GCTGGAAGCGATGACCATGGCAGCATTTCTCGCGAGACGGCTTATTGGTAACCGATCGAG 64
||| ||||||||||||||||||||| ||| ||| ||||||| || || ||||||||||
Sbjct 60 GCTTGAAGCGATGACCATGGCAGCAAATCTAGCGCGACGGCTGATCGGAAACCGATCGA- 118
Query 65 C-CAGATTCTCGG-GACTTCGAGTTCTAGCTCCGGTGC-GTTCATTTCCGTTTCTAGGGC 121
| ||||| || || | | | || |||||||| ||||| | | | ||| || |||||||
Sbjct 119 CTCAGATCCTTGGAGCCGT-GAACTCTAGCTCAGGTGCGGCT-AGTTCTGTCGCTAGGGC 176
Query 122 TTTCTTCTCCTCCACCACTCCGATCAAAGCAACTCTCTTTCCC-GGTGATGGGATCGGTC 180
||||| |||||||||||||||||||| ||||||||| ||||| || |||||||||||||
Sbjct 177 TTTCTGCTCCTCCACCACTCCGATCACCGCAACTCTC-TTCCCTGGCGATGGGATCGGTC 235
Query 181 CCGAAATCGCTGAATCTGTCAAACAGGTGTTTACTGCCGCTGATGTGACC-ATTGATTGG 239
|||| ||||| |||||||||||| |||||||||| | |||| ||| ||| ||||| |||
Sbjct 236 CCGAGATCGCCGAATCTGTCAAAAAGGTGTTTACAACAGCTGGTGT-ACCAATTGAGTGG 294
Query 240 GACGAACAGTTTGTTGGTACTGAAG-TAGATCCTAGAACCA-ATAGTTTCTTGACTTGGG 297
|| ||||| | |||||| |||| || ||||||| |||| || | ||||||||||| ||||
Sbjct 295 GAAGAACACTATGTTGGGACTG-AGATAGATCCGAGAA-CACAGAGTTTCTTGACATGGG 352
Query 298 AAAATCTTC-AATCTGTGCTTAAAAACAAGGTTGGTTTGAAAGGACCAATGGCAACGCCA 356
||| || || ||||||||| || |||||| |||||||||||||| |||||||| || |||
Sbjct 353 AAAGTC-TCGAATCTGTGCGTAGAAACAAAGTTGGTTTGAAAGGTCCAATGGCTACTCCA 411
Query 357 ATT-GGAAAGGGTCACCGTTCCTTGAACCTTACTCTTAGGAAAGAGCTGAATTTGTATGC 415
||| ||||| ||||||||||| |||||||| ||||||||||||||||| ||| | |||||
Sbjct 412 ATTGGGAAA-GGTCACCGTTCTTTGAACCTGACTCTTAGGAAAGAGCTTAATCTATATGC 470
Query 416 CAATGTTAGGCCTTGCTACAGTCTTCCTGGTTACAAAACCCGTTATGATGATGTTGATCT 475
||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 471 CAATGTTAGACCTTGTTACAGTCTTCCTGGTTACAAAACTCGTTACGATGATGTTGATCT 530
Query 476 CATTACCATTC-GTGAAAACACCGAAGGAGAGTACAGTGGGCTTGAACACCAGGTCGTCA 534
|||||||| || | |||||||| |||||||| |||||||| |||||||| ||||| ||
Sbjct 531 CATTACCA-TCAGAGAAAACACGGAAGGAGAATACAGTGGCCTTGAACATCAGGTTGT-T 588
Query 535 AG-GGTGTGGTGGAAAGTCTTAAAATTATTACCCGTAAGGCGAGTATGAGAGTTGCTGAG 593
|| ||||||||||||||||||||||| ||||||||| |||||||| |||||||||| |||
Sbjct 589 AGAGGTGTGGTGGAAAGTCTTAAAATCATTACCCGTCAGGCGAGTTTGAGAGTTGCAGAG 648
Query 594 TATGCCTTTCTTTATGCCAAGACTCACGGAAGGA-AGAAAGTTTCAGCAATTCATAAAGC 652
||||| ||||| |||||||||||||| |||| || ||| |||||| || || || |||||
Sbjct 649 TATGCTTTTCTCTATGCCAAGACTCATGGAA-GAGAGAGAGTTTCTGCTATCCACAAAGC 707
Query 653 CAACATTATGCAGAAAACTGATGGTCT-TTTCCTGC-AGTGTTGT-GATGAGGTTGCTAA 709
||||||||||||||||||||| ||||| ||| || | |||||||| | |||||||||| |
Sbjct 708 CAACATTATGCAGAAAACTGACGGTCTCTTT-CT-CAAGTGTTGTCG-TGAGGTTGCTGA 764
Query 710 GAAGTATCCTGAGATATA-TTACGAGAAGGTTGTTATTGACAATTGCTGTATGATGCTTG 768
||||||||||||||| | ||||||| |||| ||||||||||| ||||||||||||||||
Sbjct 765 GAAGTATCCTGAGAT-CACTTACGAGGAGGTCGTTATTGACAACTGCTGTATGATGCTTG 823
Query 769 TGAAAAACCCAGCACTTTTTGATGTCTTGGTGATGCCAAATCTCTATGGAGATATTATCA 828
|||||||||||||||||||||||||||||||||||||||| || || || || ||||| |
Sbjct 824 TGAAAAACCCAGCACTTTTTGATGTCTTGGTGATGCCAAACCTGTACGGTGACATTATTA 883
Query 829 GCGATTTGTGTGCCGGACTTG-TTGGGGGACTAGGACTGACTCCTAGTATG-AATATTGG 886
||||| ||||||||||| ||| |||| ||||||||| ||||||| ||| || ||||||||
Sbjct 884 GCGATCTGTGTGCCGGA-TTGGTTGGAGGACTAGGATTGACTCCAAGT-TGTAATATTGG 941
Query 887 GGAGGATGGTATTGCCCTTGCTGAAGCTGTTCACGGCTCTGCACCTGATATTGCTGGAAA 946
|| |||||| | |||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 942 AGAAGATGGTGTAGCCCTTGCTGAAGCAGTTCACGGTTCTGCACCTGATATCGCTGGAAA 1001
Query 947 GAACCTGGCGAACCCAACAGCTTTGCTACTGAGTGGAGTGATGATGTTGCGGCACCTGAA 1006
|||| ||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||
Sbjct 1002 GAACTTGGCGAACCCAACCGCGTTGCTTCTGAGTGGAGTGATGATGTTGCGTCACCTGAA 1061
Query 1007 GCTCAACAAACAAGCAGAGCAAATCCACAGTGCCATCATCAACACAATAGCCGAGGG-AA 1065
| ||||| |||||||||| |||||||||||||| ||||||||||| ||||| ||||| ||
Sbjct 1062 GTTCAACGAACAAGCAGAACAAATCCACAGTGCAATCATCAACACCATAGCAGAGGGCAA 1121
Query 1066 AGTATAGAACTGCTGATCTCGGAGGTACCTCAACCACAACAGATTTCACAAAAGCCATCT 1125
| || ||||| || ||||| ||||||| || ||||| || || |||||||| || ||||
Sbjct 1122 A-TACAGAACCGCGGATCTTGGAGGTAGTTCGACCACCACGGAATTCACAAAGGCAATCT 1180
Query 1126 GTGATCATCTCTAAACACCCGTAAAAACCA 1155
|||||||||||| |||| | |||||| |||
Sbjct 1181 GTGATCATCTCTGAACATC-GTAAAATCCA 1209
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56927418030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5