BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928663

Length=340
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G09860.1 | Symbols:  | unknown protein; Has 34 Blast hits to...   547    2e-155


> AT3G09860.1 | Symbols:  | unknown protein; Has 34 Blast hits 
to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:3026055-3027234 FORWARD 
LENGTH=616
Length=616

 Score =  547 bits (296),  Expect = 2e-155
 Identities = 321/333 (96%), Gaps = 2/333 (1%)
 Strand=Plus/Plus

Query  2    GACGAGAGAGAGAGTGAAAATGGAGAAGTACTTTGGAAATGCATACAGGGGAGATCCAGG  61
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  67   GACGAGAGAGAGAGTGAAAATGGAGAAGTACTTTGGAAATGCGTACAGGGGAGATCCAGG  126

Query  62   AGTGCCACATGCAGATGCAGATCGGTTCGTGAATATATGGATTGGTTCTGCTGCTTTCTC  121
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  127  AGTGCCACATGCAGATGCAGATCGTTTCGTGAATATATGGATTGGTTCTGCTGCTTTCTC  186

Query  122  TGTTCTCACCTGGGTCAATCCTTACATGTGGCAGCTCTCTAACCAGTTCAATTATCATGA  181
             ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct  187  CGTTCTTACCTGGGTTAATCCTTACATGTGGCAGCTCTCTAACCAGTTCAATTACCATGA  246

Query  182  TAAGTGGATGCTGTTTGAGCAGTACCACTGGAAAAAAGCAAGGGCAAAGAAGCAGCCTTA  241
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  247  CAAGTGGATGCTGTTTGAGCAGTACCACTGGAAAAAAGCAAGGGCAAAGAAGCAACCTTA  306

Query  242  TGAATTCAAGTGGAATAAGATACCTAAAGAAGTCAGGGACTCGTACTATTACAACTGGCC  301
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  307  TGAATTCAAGTGGAATAAGATACCCAAAGAAGTCAGGGACTCGTACTATTACAACTGGCC  366

Query  302  TGTCTACTTCCCATAGAAGTGTCT--GTGTTGC  332
             |||||||||||||||||||||||  |||||||
Sbjct  367  AGTCTACTTCCCATAGAAGTGTCTCTGTGTTGC  399



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15884608684


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5