BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928664

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G09870.1 | Symbols:  | SAUR-like auxin-responsive protein fa...   547    2e-155


> AT3G09870.1 | Symbols:  | SAUR-like auxin-responsive protein 
family  | chr3:3027424-3027957 REVERSE LENGTH=534
Length=534

 Score =  547 bits (296),  Expect = 2e-155
 Identities = 345/369 (93%), Gaps = 2/369 (1%)
 Strand=Plus/Plus

Query  17   TTGACAATGAGCAAAAAGCTGAAGATGTTCATGAGAAAGATACAAACTTGCTGCTTATTC  76
            |||| |||| |||||||| | ||||| |||||||||||| |||||| |||||||||||||
Sbjct  56   TTGAGAATGTGCAAAAAGTTTAAGATTTTCATGAGAAAGCTACAAATTTGCTGCTTATTC  115

Query  77   ACTAGATTCTCCAAAAGGGTAGGGAATTGTGGTGAGTTCGAGGAAGAGTGTAATGCTGGA  136
            ||||||||||| |||||||||||||||| | ||||||| ||||||||| ||||||||| |
Sbjct  116  ACTAGATTCTCTAAAAGGGTAGGGAATTATTGTGAGTTTGAGGAAGAGGGTAATGCTGCA  175

Query  137  TCAATGATTCCAAGTGATGTGAAGGAAGGGCATGTAGCAGTGATTGCGGTTAAGGGAGAG  196
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  176  TCAATGATTCCAAGTGATGTGAAGGAAGGGCATGTAGCAGTGATTGCGGTTAAGGGAGAG  235

Query  197  AGAATTAAGAGGTTTGTTTTGGAGCTTGAAGAGTTGAACAAACCTGAGTTCTTGAGGTTG  256
            |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||
Sbjct  236  AGAATTAAGAGGTTTGTTTTAGAGCTTGAAGAGTTGAACAAACCAGAGTTCTTGAGGCTG  295

Query  257  CTCGAACAGACCAA-AGAGGAGTTCGGGTTTCAACCGAGAGGACCTCTGACCATTCCATG  315
            |||||||| | | | |||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct  296  CTCGAACA-AGCGAGAGAGGAATTCGGGTTTCAACCAAGAGGACCTCTGACCATCCCATG  354

Query  316  CCAGCCGGAAGAAGTACAGAAGATTCTACAAGGAAGTAGAGAGTCTTGATTTTTGATTTG  375
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  355  CCAGCCGGAAGAAGTACAGAAGATTCTACAAGGAAGTAGAGAGTCTTGAATTTTGATTTG  414

Query  376  TAGAGCAAC  384
            |||||||||
Sbjct  415  TAGAGCAAC  423



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18096389640


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5