BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg928670 Length=1230 Score E Sequences producing significant alignments: (Bits) Value AT3G09915.1 | Symbols: | pseudogene, hypothetical protein | ch... 501 6e-141 AT5G38680.1 | Symbols: | Galactose oxidase/kelch repeat superf... 375 4e-103 > AT3G09915.1 | Symbols: | pseudogene, hypothetical protein | chr3:3039015-3040186 REVERSE LENGTH=1172 Length=1172 Score = 501 bits (271), Expect = 6e-141 Identities = 427/499 (86%), Gaps = 23/499 (5%) Strand=Plus/Plus Query 33 AAATCAATGTGGTCCCTCGAAACGAACAAGAAGAGGAAGACAACAACTACGACGGAGAAG 92 |||||||||| |||||| |||| ||| | |||||||||||| || |||| ||| ||||| Sbjct 3 AAATCAATGTCGTCCCTGGAAAAGAAGAGGAAGAGGAAGACTACGACTAGGACAAAGAAG 62 Query 93 AAGAAGTTGTCTCCAAATCCGTCACTTCCGGATGATTTGGTATTGCG-CATCATCGCACG 151 |||||| |||| ||||||| |||| ||| |||||||| ||||| | |||||||||||| Sbjct 63 AAGAAGCTGTCCCCAAATCAGTCA-ATCCCTATGATTTGCTATTG-GACATCATCGCACG 120 Query 152 CGTCTCAAGGTTGTACTATCCAACTCTCTCACTTGTTTCCAAGAGGTTTCGATCTCTCCT 211 |||| |||| ||||||||||| ||||||||||| ||||||||||| |||||||| ||||| Sbjct 121 CGTCCCAAGATTGTACTATCCGACTCTCTCACTCGTTTCCAAGAGCTTTCGATCCCTCCT 180 Query 212 AGCTTCACCGGAGCTTTACAAGG-C--CAGGTCGCTCTCGGGCCACACTGAGAGTTGTCT 268 ||||||||||||||||||||||| | |||||| ||| ||| ||||| ||| ||||||| Sbjct 181 AGCTTCACCGGAGCTTTACAAGGCCAGCAGGTCATTCTTGGGTCACACCGAGCGTTGTCT 240 Query 269 CTATGTGTGCTTACAGTGCTGTCCTGGTTATCGCTGGTTCACCCTCTGCCGGAAGCCAGA 328 |||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||| Sbjct 241 CTATGTGTGCTTACGGTGCTGTCCTGGTTATCGCTGGTTCACCCTGTGTCGGAAGCCAGA 300 Query 329 TCAAACCCTATCCAATTACACCACT-AAGAAGAAGTCAAGTGGATATGTTTTGGCAACAG 387 |||||||||||||||| |||||||| || |||||||||||||| |||||||||||||||| Sbjct 301 TCAAACCCTATCCAATGACACCACTGAA-AAGAAGTCAAGTGGGTATGTTTTGGCAACAG 359 Query 388 TACCGATTCCCAGTTTTCAAAAAGGGAGCTTTTCGAGTCTCGTGGCGGTTGGTTCTAATA 447 | || ||||| |||||||| ||| | |||||||||||||||||| |||||||||| ||| Sbjct 360 TCCCCATTCCTAGTTTTCATAAACCGCGCTTTTCGAGTCTCGTGGTGGTTGGTTCTGATA 419 Query 448 TTTATAACATTGGGGGATCCAACTACCACGGGCCTTCCTATAGCGTCTCGATTTTGGATT 507 | || | | | | | | ||||||||| |||| || |||||||||| |||||| Sbjct 420 TCTA---C-T------A-C-A--T-CCACGGGCCCTCCTCTAACGTCTCGATTCTGGATT 464 Query 508 GCCGGTCTCATACGTGGCG 526 |||||||||| |||||||| Sbjct 465 GCCGGTCTCACACGTGGCG 483 > AT5G38680.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr5:15477324-15479040 FORWARD LENGTH=1074 Length=1074 Score = 375 bits (203), Expect = 4e-103 Identities = 618/810 (76%), Gaps = 61/810 (8%) Strand=Plus/Plus Query 106 CAAATCCGTCACTTCCGGATGATTTGGTATTGCGCAT-CATCGCACGCGTCTCAAGGTTG 164 |||||||||||||||| |||| |||| || | || | ||||||||| |||||||| ||| Sbjct 44 CAAATCCGTCACTTCCCGATGCTTTGATAATAAGC-TGCATCGCACGAGTCTCAAGATTG 102 Query 165 TACTATCCAACTCTCTCAC-TTGTTTCCAAGAGGTTTCGATCTCTCCTAGCTTCACCGGA 223 || ||||| | |||||| | |||| |||||||| |||||||||||||||||||||||||| Sbjct 103 TATTATCCGATTCTCTC-CTTTGTCTCCAAGAGCTTTCGATCTCTCCTAGCTTCACCGGA 161 Query 224 GCTTTACAAGGC-CAGGTCGCTCTCGGGCCACACTGAGAGTTGTCTCTATGTGTGCTTAC 282 ||||||||||| | |||| |||| | || ||| ||| ||||||| ||||| |||||| Sbjct 162 GCTTTACAAGGAAC-GGTCACTCTTGAACCGCACCGAGGGTTGTCTATATGTATGCTTAT 220 Query 283 AGTGCTGTCCTGGTT-AT--C----GCTGGTTCACCCTCTGCCGGAAGCCAGATCAAACC 335 | | |||| || | | ||||||| || |||||| ||| || |||||| || Sbjct 221 ACTTAAATCCTT-TTGAGAGCCCTAGCTGGTTTACTCTCTGCTTGAAACCTGATCAAGCC 279 Query 336 CTATCCAATTACACCACTAA---GAAGAAGTCAAGTGGATATGTTTTGGCAACAGTACCG 392 ||||| | | || | ||| ||||||||||||||| ||||||||||| |||||| | Sbjct 280 CTATCTTCTGAAACAAGTAATAAGAAGAAGTCAAGTGGGTATGTTTTGGCTACAGTATCA 339 Query 393 ATTCC-CAGTTTTCAAAAAGGG-AGCTTTTCGAGTCTCGTGGCGGTTGGTTCTAATATTT 450 ||||| || | || | | | | || | |||||||||||||||||||||||||| | Sbjct 340 ATTCCACA-TCCTCGTCTTGTGCAACGTTCC-AGTCTCGTGGCGGTTGGTTCTAATATCT 397 Query 451 ATAACATTGGGGGATCCAACTACCACGGGCCTTCCTATAGCGTCTCGATTTTGGATTGCC 510 | |||||||| |||||| || ||| | || || ||| ||||||||||| ||||||| Sbjct 398 ACAACATTGGCAGATCCA--TATCAC---C-TTACTCTAGTGTCTCGATTTTTGATTGCC 451 Query 511 GGTCTCATACGTGGCGTGAGGCTCCAAGATTGCGTGTGGAACAACTGTGTC-TTTCTGCT 569 ||||||| |||||||| ||||||||||| |||| ||||| | | | || |||||||| Sbjct 452 GGTCTCACACGTGGCGCGAGGCTCCAAGCTTGCCAGTGGAGCTAGT-TGAAGTTTCTGCT 510 Query 570 AGTGTCCTTGATCG-AAAGATATATGTAGCAGGATGCTACAACGATAGTGATTCAAATT- 627 | |||||||| || ||||||||||||||| ||| | | ||| ||| | ||||| || Sbjct 511 GGCGTCCTTGA-CGGAAAGATATATGTAGCCGGAAGTTGCAAAGATGGAGATTCTC-TTA 568 Query 628 -CTTTGAAGAACTTCTTG-GAGGTGTTCGACACAAAAACACAAATTTGGGAT-ACTG-AG 683 ||| ||||||| ||| |||||||||||||||||||||||| |||||||| | || | Sbjct 569 ACTT-GAAGAACA-CTTTCGAGGTGTTCGACACAAAAACACAAGTTTGGGATCA-TGTA- 624 Query 684 CCCATCGCTTGCAGCGGGAGAATAGACAACTTTCTTTACTCCAAAAGCACT-TGTATTGA 742 || ||| ||| || || | || | ||||| || | ||||||||||| | |||||||| Sbjct 625 CCTATCCCTTACAACGAAACAAAACACAACATT-T--ACTCCAAAAGCT-TATGTATTGA 680 Query 743 CGGAAAGTTCCACGT-GGTGACTGAA-AGAGAGGGGGTGATTGCTTACGATTCCAAGAAA 800 || ||||| | || || | || || ||| ||| ||| || ||||| || |||||||| Sbjct 681 CGAAAAGTGGTATGTAGGGG-CT-AAGAGAAAGGTGGT--TT-CTTACAATCCCAAGAAA 735 Query 801 GGTAGATGGGACAG-GACTGGA-CAAAGTT-TGTA-TTATCTTATTTATTCAAATTCTTT 856 |||| ||||||| | || | || || | |||| |||| | | |||| || || Sbjct 736 GGTATATGGGACCTTGT-TGAATCAGAGATGTGTAGTTATA--AGTC-TTCATATGATTA 791 Query 857 TTGCGAGATAGAGAATGTTTTGTACTTTGT 886 ||| ||||||||||| |||||||||| ||| Sbjct 792 TTGTGAGATAGAGAACGTTTTGTACTCTGT 821 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60441456180 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5