BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928670
Length=1230
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09915.1 | Symbols: | pseudogene, hypothetical protein | ch... 501 6e-141
AT5G38680.1 | Symbols: | Galactose oxidase/kelch repeat superf... 375 4e-103
> AT3G09915.1 | Symbols: | pseudogene, hypothetical protein |
chr3:3039015-3040186 REVERSE LENGTH=1172
Length=1172
Score = 501 bits (271), Expect = 6e-141
Identities = 427/499 (86%), Gaps = 23/499 (5%)
Strand=Plus/Plus
Query 33 AAATCAATGTGGTCCCTCGAAACGAACAAGAAGAGGAAGACAACAACTACGACGGAGAAG 92
|||||||||| |||||| |||| ||| | |||||||||||| || |||| ||| |||||
Sbjct 3 AAATCAATGTCGTCCCTGGAAAAGAAGAGGAAGAGGAAGACTACGACTAGGACAAAGAAG 62
Query 93 AAGAAGTTGTCTCCAAATCCGTCACTTCCGGATGATTTGGTATTGCG-CATCATCGCACG 151
|||||| |||| ||||||| |||| ||| |||||||| ||||| | ||||||||||||
Sbjct 63 AAGAAGCTGTCCCCAAATCAGTCA-ATCCCTATGATTTGCTATTG-GACATCATCGCACG 120
Query 152 CGTCTCAAGGTTGTACTATCCAACTCTCTCACTTGTTTCCAAGAGGTTTCGATCTCTCCT 211
|||| |||| ||||||||||| ||||||||||| ||||||||||| |||||||| |||||
Sbjct 121 CGTCCCAAGATTGTACTATCCGACTCTCTCACTCGTTTCCAAGAGCTTTCGATCCCTCCT 180
Query 212 AGCTTCACCGGAGCTTTACAAGG-C--CAGGTCGCTCTCGGGCCACACTGAGAGTTGTCT 268
||||||||||||||||||||||| | |||||| ||| ||| ||||| ||| |||||||
Sbjct 181 AGCTTCACCGGAGCTTTACAAGGCCAGCAGGTCATTCTTGGGTCACACCGAGCGTTGTCT 240
Query 269 CTATGTGTGCTTACAGTGCTGTCCTGGTTATCGCTGGTTCACCCTCTGCCGGAAGCCAGA 328
|||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||
Sbjct 241 CTATGTGTGCTTACGGTGCTGTCCTGGTTATCGCTGGTTCACCCTGTGTCGGAAGCCAGA 300
Query 329 TCAAACCCTATCCAATTACACCACT-AAGAAGAAGTCAAGTGGATATGTTTTGGCAACAG 387
|||||||||||||||| |||||||| || |||||||||||||| ||||||||||||||||
Sbjct 301 TCAAACCCTATCCAATGACACCACTGAA-AAGAAGTCAAGTGGGTATGTTTTGGCAACAG 359
Query 388 TACCGATTCCCAGTTTTCAAAAAGGGAGCTTTTCGAGTCTCGTGGCGGTTGGTTCTAATA 447
| || ||||| |||||||| ||| | |||||||||||||||||| |||||||||| |||
Sbjct 360 TCCCCATTCCTAGTTTTCATAAACCGCGCTTTTCGAGTCTCGTGGTGGTTGGTTCTGATA 419
Query 448 TTTATAACATTGGGGGATCCAACTACCACGGGCCTTCCTATAGCGTCTCGATTTTGGATT 507
| || | | | | | | ||||||||| |||| || |||||||||| ||||||
Sbjct 420 TCTA---C-T------A-C-A--T-CCACGGGCCCTCCTCTAACGTCTCGATTCTGGATT 464
Query 508 GCCGGTCTCATACGTGGCG 526
|||||||||| ||||||||
Sbjct 465 GCCGGTCTCACACGTGGCG 483
> AT5G38680.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:15477324-15479040 FORWARD LENGTH=1074
Length=1074
Score = 375 bits (203), Expect = 4e-103
Identities = 618/810 (76%), Gaps = 61/810 (8%)
Strand=Plus/Plus
Query 106 CAAATCCGTCACTTCCGGATGATTTGGTATTGCGCAT-CATCGCACGCGTCTCAAGGTTG 164
|||||||||||||||| |||| |||| || | || | ||||||||| |||||||| |||
Sbjct 44 CAAATCCGTCACTTCCCGATGCTTTGATAATAAGC-TGCATCGCACGAGTCTCAAGATTG 102
Query 165 TACTATCCAACTCTCTCAC-TTGTTTCCAAGAGGTTTCGATCTCTCCTAGCTTCACCGGA 223
|| ||||| | |||||| | |||| |||||||| ||||||||||||||||||||||||||
Sbjct 103 TATTATCCGATTCTCTC-CTTTGTCTCCAAGAGCTTTCGATCTCTCCTAGCTTCACCGGA 161
Query 224 GCTTTACAAGGC-CAGGTCGCTCTCGGGCCACACTGAGAGTTGTCTCTATGTGTGCTTAC 282
||||||||||| | |||| |||| | || ||| ||| ||||||| ||||| ||||||
Sbjct 162 GCTTTACAAGGAAC-GGTCACTCTTGAACCGCACCGAGGGTTGTCTATATGTATGCTTAT 220
Query 283 AGTGCTGTCCTGGTT-AT--C----GCTGGTTCACCCTCTGCCGGAAGCCAGATCAAACC 335
| | |||| || | | ||||||| || |||||| ||| || |||||| ||
Sbjct 221 ACTTAAATCCTT-TTGAGAGCCCTAGCTGGTTTACTCTCTGCTTGAAACCTGATCAAGCC 279
Query 336 CTATCCAATTACACCACTAA---GAAGAAGTCAAGTGGATATGTTTTGGCAACAGTACCG 392
||||| | | || | ||| ||||||||||||||| ||||||||||| |||||| |
Sbjct 280 CTATCTTCTGAAACAAGTAATAAGAAGAAGTCAAGTGGGTATGTTTTGGCTACAGTATCA 339
Query 393 ATTCC-CAGTTTTCAAAAAGGG-AGCTTTTCGAGTCTCGTGGCGGTTGGTTCTAATATTT 450
||||| || | || | | | | || | |||||||||||||||||||||||||| |
Sbjct 340 ATTCCACA-TCCTCGTCTTGTGCAACGTTCC-AGTCTCGTGGCGGTTGGTTCTAATATCT 397
Query 451 ATAACATTGGGGGATCCAACTACCACGGGCCTTCCTATAGCGTCTCGATTTTGGATTGCC 510
| |||||||| |||||| || ||| | || || ||| ||||||||||| |||||||
Sbjct 398 ACAACATTGGCAGATCCA--TATCAC---C-TTACTCTAGTGTCTCGATTTTTGATTGCC 451
Query 511 GGTCTCATACGTGGCGTGAGGCTCCAAGATTGCGTGTGGAACAACTGTGTC-TTTCTGCT 569
||||||| |||||||| ||||||||||| |||| ||||| | | | || ||||||||
Sbjct 452 GGTCTCACACGTGGCGCGAGGCTCCAAGCTTGCCAGTGGAGCTAGT-TGAAGTTTCTGCT 510
Query 570 AGTGTCCTTGATCG-AAAGATATATGTAGCAGGATGCTACAACGATAGTGATTCAAATT- 627
| |||||||| || ||||||||||||||| ||| | | ||| ||| | ||||| ||
Sbjct 511 GGCGTCCTTGA-CGGAAAGATATATGTAGCCGGAAGTTGCAAAGATGGAGATTCTC-TTA 568
Query 628 -CTTTGAAGAACTTCTTG-GAGGTGTTCGACACAAAAACACAAATTTGGGAT-ACTG-AG 683
||| ||||||| ||| |||||||||||||||||||||||| |||||||| | || |
Sbjct 569 ACTT-GAAGAACA-CTTTCGAGGTGTTCGACACAAAAACACAAGTTTGGGATCA-TGTA- 624
Query 684 CCCATCGCTTGCAGCGGGAGAATAGACAACTTTCTTTACTCCAAAAGCACT-TGTATTGA 742
|| ||| ||| || || | || | ||||| || | ||||||||||| | ||||||||
Sbjct 625 CCTATCCCTTACAACGAAACAAAACACAACATT-T--ACTCCAAAAGCT-TATGTATTGA 680
Query 743 CGGAAAGTTCCACGT-GGTGACTGAA-AGAGAGGGGGTGATTGCTTACGATTCCAAGAAA 800
|| ||||| | || || | || || ||| ||| ||| || ||||| || ||||||||
Sbjct 681 CGAAAAGTGGTATGTAGGGG-CT-AAGAGAAAGGTGGT--TT-CTTACAATCCCAAGAAA 735
Query 801 GGTAGATGGGACAG-GACTGGA-CAAAGTT-TGTA-TTATCTTATTTATTCAAATTCTTT 856
|||| ||||||| | || | || || | |||| |||| | | |||| || ||
Sbjct 736 GGTATATGGGACCTTGT-TGAATCAGAGATGTGTAGTTATA--AGTC-TTCATATGATTA 791
Query 857 TTGCGAGATAGAGAATGTTTTGTACTTTGT 886
||| ||||||||||| |||||||||| |||
Sbjct 792 TTGTGAGATAGAGAACGTTTTGTACTCTGT 821
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60441456180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5