BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928678

Length=323
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G09950.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   449    6e-126


> AT3G09950.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G41761.1); 
Has 128 Blast hits to 128 proteins in 12 species: Archae - 
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:3060090-3060633 
REVERSE LENGTH=544
Length=544

 Score =  449 bits (243),  Expect = 6e-126
 Identities = 285/305 (93%), Gaps = 4/305 (1%)
 Strand=Plus/Plus

Query  20   gaTGGGGAAGGTGAGTAATTGGCTTCTTAACTTTCTGAACCATGCCAACAATCAGGAAAA  79
            ||||||||||| | |   |||||||||||||||||||||||||||||| ||||| |||| 
Sbjct  1    GATGGGGAAGG-G-G-GGTTGGCTTCTTAACTTTCTGAACCATGCCAAAAATCAAGAAAG  57

Query  80   TATGGAGAATCTTGACAAAAACGGTGCCGTAGAGGCCTCAAGCAGTGGGTTTAAGATGCC  139
            | ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct  58   TGTGGAGAATCTTGACAAAAACGGTGCCGTAAAGGCCCCAAGCAGTGGGTTTAAGATGCC  117

Query  140  GTTGCATTACCCAAGATACACAAAGGAGGATTATGAGGAGATGGAAGAGTGGAGATTGGA  199
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  118  GTTGCATTACCCAAGATACACAAAGGAGGATTATGAAGAGATGGAAGAGTGGAGATTGGA  177

Query  200  TTTGCTTCTCTCAGACTATGGACTTCTTGCCTTCCATGACAATACTCTCCATGAGAAGCG  259
            |||||||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct  178  TTTGCTTCTCTCGGAATACGGACTTCTTGCCTTCCATGACAATACTCTCCATGAGAAGCG  237

Query  260  AGCTTTTGCGATCGACACTTTTCTATGGCCTCATCACCCATAATTCCACCTCCTTCATT-  318
            ||||||||| |||||||||||| |||||||||||||||||||||| || |||||||||| 
Sbjct  238  AGCTTTTGCAATCGACACTTTTATATGGCCTCATCACCCATAATTTCATCTCCTTCATTT  297

Query  319  ATCTT  323
            |||||
Sbjct  298  ATCTT  302



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15030056951


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5