BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928691

Length=490
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G10020.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   713    0.0  


> AT3G10020.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: response to oxidative stress, 
anaerobic respiration; LOCATED IN: cellular_component 
unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 
13 growth stages; Has 47 Blast hits to 47 proteins in 12 
species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants 
- 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI 
BLink). | chr3:3091043-3091766 REVERSE LENGTH=724
Length=724

 Score =  713 bits (386),  Expect = 0.0
 Identities = 444/473 (94%), Gaps = 0/473 (0%)
 Strand=Plus/Plus

Query  18   AAGATGCAGACGGTATCCGTTGACGAAACCAAAAACACGGTGGTGATACGGGCGGTGCAC  77
            ||||||||| ||||||| ||||| ||||||||||||||||||||| ||||||||| ||||
Sbjct  90   AAGATGCAGGCGGTATCAGTTGATGAAACCAAAAACACGGTGGTGCTACGGGCGGAGCAC  149

Query  78   AAGAACGAAGAAGGTCGGAAATCTGTTGATAAGTTCGAACTGAAGACACGTAATCCGGAG  137
            ||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  150  AAGAATGAAGAAGGCCGGAAATCTGTTGATAAGTTCGAAGTGAAGACACGTAATCCGGAG  209

Query  138  ACGATCAAGAGCGTTGAGCGGAAGCTTATGGAGAAAGGTGTTCAACGGATGGATCGTCAT  197
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  210  ACGATCAAGAGCGTTGAGCGGAAGCTTATGGAGAAAGGTGTTCAACGGATGGATCGTCAT  269

Query  198  CCTTCCGATGGGATTCCTCTCAGGCGACCTCCACCGAAGTCTGGTCACGGTGGTAAGTAC  257
            ||||||||||||||||||||||||||||| ||| ||||||| |||||||| || ||||||
Sbjct  270  CCTTCCGATGGGATTCCTCTCAGGCGACCACCATCGAAGTCAGGTCACGGCGGGAAGTAC  329

Query  258  ACGTGGGAGGGACCAGATCGGATGGAGGATTACGAGATGCAGCCGGATCCACCGGCGATG  317
            |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  330  ACGTGGGAAGGACCTGATCGGATGGAGGATTACGAGATGCAGCCGGATCCACCGGCGATG  389

Query  318  GATGAAGGAGATCCTAATTACGACGAGGAACAAGCGAAGAAGATTGATGATGACGTGGCG  377
            |||||||||||||||||||||||||||||||| | |||||||| || |||||||||||||
Sbjct  390  GATGAAGGAGATCCTAATTACGACGAGGAACAGGTGAAGAAGAGTGGTGATGACGTGGCG  449

Query  378  GTTGAGCTTGTGAAAGGAGATGTTGAGGTGGCGAAGGAAGCGCCGGCTGGTGTGGCGAGG  437
            |||||||||||||||||||| ||||||||||| ||||| || ||||||||||| || |||
Sbjct  450  GTTGAGCTTGTGAAAGGAGAGGTTGAGGTGGCTAAGGAGGCTCCGGCTGGTGTTGCTAGG  509

Query  438  GTTGAGGTTGATCCACGCTTGGTCAGTCGTTGAGTGTTTGATAGAGGATGAAG  490
            |||||||||||||| ||||||||| ||||||||| ||||||||||||| ||||
Sbjct  510  GTTGAGGTTGATCCTCGCTTGGTCGGTCGTTGAGAGTTTGATAGAGGAGGAAG  562



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23358878355


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5