BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928695
Length=735
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10060.1 | Symbols: | FKBP-like peptidyl-prolyl cis-trans i... 1136 0.0
> AT3G10060.1 | Symbols: | FKBP-like peptidyl-prolyl cis-trans
isomerase family protein | chr3:3102157-3104014 FORWARD LENGTH=1040
Length=1040
Score = 1136 bits (615), Expect = 0.0
Identities = 696/736 (95%), Gaps = 2/736 (0%)
Strand=Plus/Plus
Query 1 AACACAAAAACATTGAAACAATGATCTTAACAATGAAACTTGTTCACCCTCTCCATCACT 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 115 AACACAAAAACATTGAAAGAATGATCTTAACAATGAAACTTGTTCACCCTCTCCATCACT 174
Query 61 CTCTGTCTTCCTCCATTCCTTTTCCATCAAGAAAAAGGCAATCCAAACCGTACCGGTGCT 120
|| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 175 CTTTGTCTTCCTCCATTCCCTTTCCCTCAAGAAAAAGGCAATCCAAACCGTACCGGTGCT 234
Query 121 CGTTACCTTCTCCCGGCTGCGAAAAGGTCATCAGACCAGAGACTGTCGTTTCTCCGGCGC 180
||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||
Sbjct 235 CGTTACCTTCTCCCGGCTGCGAAAAGGTCATCAGAACAGAGACTGTCCTGCCTCCGGCGC 294
Query 181 CTGTGAGCTT-CCAAGGGAGAAGGGTTTTACTTGGATGTCTCCTCGCTACCGCTTCTGGG 239
| ||||| || ||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 295 CGGTGAG-TTGTGAAGGGAGAAGGGTCTTACTTGGATGTCTTCTCGCTACAGCTTCTGGG 353
Query 240 ATTTTGTCAACTGATTCAGCCGAGGCCGTAAGCACCAGCAGAAGAGCTCTACGTGCATCC 299
||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 354 ATTTTGTCAACTGGTTCAGCCGAGGCAGTAAGCACCAGTAGAAGAGCTCTACGTGCATCC 413
Query 300 AAGTTACCGGAAAGCGATTTCACGACTCTCCCTAATGGTCTCAAGTACTATGATATAAAG 359
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 414 AAGTTACCGGAAAGCGATTTCACGACTCTCCCCAATGGTCTCAAGTACTATGATATAAAG 473
Query 360 GTTGGCAATGGAGCAGAGGCTGTGAAAGGATCTCGGGTCGCAGTACGGGATAACGTAAAA 419
|||||||||||||||||||||||||||||||||||||||||||| | || | ||||
Sbjct 474 GTTGGCAATGGAGCAGAGGCTGTGAAAGGATCTCGGGTCGCAGTTCACTATGTTGCAAAA 533
Query 420 TGGAAAGGGATAACGTTTATGACAAGCCGACAAGGACTTGGCGTTGGAGGTGGAACGCCT 479
||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 534 TGGAAAGGGATAACGTTCATGACAAGTCGACAAGGACTTGGTGTTGGAGGTGGAACGCCT 593
Query 480 TATGGGTTTGACGTTGGGCAATCAGAGAGAGGCAATGTTCTGAAAGGACTTGATCTTGGT 539
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 TATGGGTTTGACGTTGGTCAATCAGAGAGAGGCAATGTTCTGAAAGGACTTGATCTTGGT 653
Query 540 GTTGAAGGGATGCGTGTAGGCGGTCAGAGATTGGTGATTGTTCCTCCTGAGCTGGCTTAC 599
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 654 GTTGAAGGGATGCGTGTAGGCGGTCAGAGATTGGTGATTGTTCCTCCCGAGCTGGCTTAC 713
Query 600 GGGAAGACAGGAGTGCAAGAGATTCCTCCAAATGCAACGATAGAGCTTGACATTGAGTTA 659
||||||| |||||||||||||||||||||||| || ||||||||||||||||||||| |
Sbjct 714 GGGAAGAAAGGAGTGCAAGAGATTCCTCCAAACGCTACGATAGAGCTTGACATTGAGCTG 773
Query 660 TTATCAATCAAGCAGAGTCCTTTCGGGACGCCAGTGAAGATCGTTGAAGGCTAAAAGGAC 719
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 774 TTATCAATCAAGCAGAGTCCTTTCGGGACGCCAGTGAAGATAGTTGAAGGCTAAAAGGAC 833
Query 720 TAATGAAGCCAAAATT 735
|||||||||||| |||
Sbjct 834 TAATGAAGCCAACATT 849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35666244370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5