BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928702
Length=995
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10130.1 | Symbols: | SOUL heme-binding family protein | ch... 1160 0.0
> AT3G10130.1 | Symbols: | SOUL heme-binding family protein |
chr3:3130998-3133192 REVERSE LENGTH=1088
Length=1088
Score = 1160 bits (628), Expect = 0.0
Identities = 881/997 (88%), Gaps = 41/997 (4%)
Strand=Plus/Plus
Query 7 GATTGCGAAGAGAAATGATGATGAGcttctcctcctccattgcatcatcatcatcccttt 66
|||||||||||||||||||||||| | ||||||||||| | | | ||||||||| ||
Sbjct 21 GATTGCGAAGAGAAATGATGATGATCAGCTCCTCCTCCA-T---T-A-CATCATCCC-TT 73
Query 67 ctcttcttctctcttcatctcaC-AAGAAATTGCCCATCGATCTCAATTCGTTTCCAAAC 125
|| |||||| |||||||||| | |||||||| || | ||| | | ||||
Sbjct 74 -TC-TCTTCTGTCTTCATCTC-CTGAGAAATTG-CC--C---CTC-A------T--AAAC 115
Query 126 CCTAACCAGAGATGCTCAGTTAGCGTCAGAACGGCGAGAGTGATTGC-TGCTATGAACAG 184
|||| |||||||||| || ||| | | | |||| || | || || |||||||
Sbjct 116 CCTATCCAGAGATGCCCAATTA-C-TTACTCCGGCTTCAG-AACGGCGAGC-GTGAACAG 171
Query 185 AGCTATCCGGCGGCAGCGGCAGAGTCAAGCCGTGTCCGCCACTGAATCCAGGGTTTCTCT 244
||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||
Sbjct 172 AGCTATCCGGCGGCAGCCGCAGAGTCCAGCCGTGTCCGCCACTGAATCTAGGGTTTCTCT 231
Query 245 CATCTTTGCTCTCGCCTCTCAGGCTTCCTCTGTCTCTCAACGCCTTTTGGCTGATTTGGC 304
| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 232 CGTCCTTGCTCTCGCCTCTCAAGCTTCCTCTGTCTCTCAACGCCTTTTGGCTGATTTGGC 291
Query 305 GGTGGAGACTGCGAAATACGT-TTTCCCGAAGAGATTCAATAG--CT-CTAATCTTGAAG 360
| |||||||||||||||| || |||||| |||||||| |||| || ||||||||||||
Sbjct 292 GATGGAGACTGCGAAATATGTGTTTCCC-AAGAGATTTGATAGCTCTACTAATCTTGAAG 350
Query 361 AAGCGTTCATGTCCGTTCCTGATCTCGAGACAATGGAA-TTCAGAGTTGTAAGTAGGACT 419
|||| |||||||| ||||| |||||||||||||| ||| || |||||| || ||| ||
Sbjct 351 AAGCTTTCATGTCTGTTCCGGATCTCGAGACAAT-GAACTTTAGAGTTCTATTTAGAACA 409
Query 420 GATAAGTACGAGATTAGACAAGTTGAGCCTTACTTTGTCGCCGAGACTACAATGCCAGGG 479
|| ||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||
Sbjct 410 GACAAGTACGAGATTAGACAAGTTGAGCCTTATTTTGTGGCCGAGACTATAATGCCAGGG 469
Query 480 GAAACTGGATTTGACTTC-TATGGTGCTTCTAAGTCTTTTAATGTGTTAGCTGAGTATCT 538
||||||||||||||| || ||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 470 GAAACTGGATTTGAC-TCTTATGGTGCTTCCAAGTCTTTTAATGTTTTAGCTGAGTACCT 528
Query 539 ATTTGGTAAGAACACAATAAAGGAGAAAATGGAGATGACGACCCCTGTTGTTACTCGTAA 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 529 CTTTGGTAAGAACACAATAAAGGAGAAAATGGAGATGACGACCCCTGTTGTTACTCGGAA 588
Query 599 AGCCCAATCTGTTGGAGATAAGATGGAAATGACTACTCCAGTAATTACTACCAAGGCAAA 658
|| ||||||||||||||| |||||||||||||| |||||||| || |||| |||||||||
Sbjct 589 AGTCCAATCTGTTGGAGAGAAGATGGAAATGACAACTCCAGTGATAACTAGCAAGGCAAA 648
Query 659 AGATCAAACCCAGTGGCGAATGTCTTTTGTCATGCCCTCAAAGTATGGCTCCAATTTTCC 718
|||||||| ||||||||| ||||||||||||||||||||||||||||| || ||||| ||
Sbjct 649 AGATCAAAACCAGTGGCGGATGTCTTTTGTCATGCCCTCAAAGTATGGTTCGAATTTGCC 708
Query 719 ATTGCCAAAAGATTCTTCAGTCAAAATTCTGGAGGTGCCGCGAAAGATTGTTGCTGTTGT 778
||| ||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||
Sbjct 709 ATTACCAAAAGATCCTTCAGTCAAAATTCAGCAAGTGCCACGAAAGATTGTTGCTGTTGT 768
Query 779 CGCCTTCTCAGGCTATGTTACCGATGAAGAGATTGAGAGACGGGAGAAAGAACTAAGGAG 838
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 769 CGCCTTCTCAGGCTATGTTACCGATGAAGAGATTGAGAGACGGGAGAGAGAACTAAGGAG 828
Query 839 AGCTCTTCATAATGACAAGAAGTTTCGAGTGAGAGATGGAGTTTCAGTTGAAGTTGCACA 898
||||||||| |||||||||||||| ||||||||||||||||| ||| |||||||||||||
Sbjct 829 AGCTCTTCAAAATGACAAGAAGTTCCGAGTGAGAGATGGAGTATCATTTGAAGTTGCACA 888
Query 899 GTATAATCCACCATTCACTCTTCCGTTTATGCGCCGCAACGAGGTTTCTCTGGAAGTTGA 958
||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct 889 GTATAATCCACCATTCACTCTCCCGTTTATGCGCCGCAACGAGGTCTCTCTCGAAGTTGA 948
Query 959 AAGCAAAGAAGATTAGCCCCATCACAAGTACACACAT 995
|| |||||||||||||||||||||||||| || ||||
Sbjct 949 AAACAAAGAAGATTAGCCCCATCACAAGT-CATACAT 984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48727122590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5