BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928707
Length=662
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10190.1 | Symbols: | Calcium-binding EF-hand family protei... 952 0.0
> AT3G10190.1 | Symbols: | Calcium-binding EF-hand family protein
| chr3:3155298-3156143 FORWARD LENGTH=846
Length=846
Score = 952 bits (515), Expect = 0.0
Identities = 617/664 (93%), Gaps = 16/664 (2%)
Strand=Plus/Plus
Query 12 AAA-TCACACTATGAAACTCACCAAATTAAATCCAAAACGTTTCTTCATCAGATCCAAAG 70
||| |||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||
Sbjct 1 AAATTCACACTATGAAACTCGCCAAACTAATTCCAAAACGTTTCTTCATCAGATCCAAAG 60
Query 71 ACCCTTCCACTGTTTCTAAATCCCACGCGACTTCTTCCTTCGGCTCCGCTTCCTCATCTT 130
| | ||||||||| ||||| |||| | || ||| ||||||||| ||||||||||||||||
Sbjct 61 ATCGTTCCACTGTCTCTAAGTCCCCCACGGCTTTTTCCTTCGGATCCGCTTCCTCATCTT 120
Query 131 CCGGCCAAGACTGTAAAAACTCC---------GGCTGTGGCGGTTCCGTTACGCCGACTA 181
||||||||||||||||||||||| ||| |||||||||||||||| |||||||
Sbjct 121 CCGGCCAAGACTGTAAAAACTCCGGTGGTGATGGCGGTGGCGGTTCCGTTACCCCGACTA 180
Query 182 GCATTCTCCCGGAGGTTCCTTCTCCTTATTCCTACGTCGAGATTCTCCAAGCGTTTAAGT 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCATTCTCCCGGAGGTTCCTTCTCCTTATTCCTACGTCGAGATTCTCCAAGCGTTTAAGT 240
Query 242 TGATAGACAGAGACAACGATGGAGCTGTCTCTAGACACGATCTTGAGTCGTTACTTAGCC 301
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGATAGACAGAGACAACGACGGAGCTGTCTCTAGACACGATCTTGAGTCGTTACTTAGCC 300
Query 302 GGCTCGGTCCTGATCCTTTGACGGAGGAGGAGATCAACGTTATGATTAAAGAGGTGGA-T 360
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 301 GGCTAGGTCCTGATCCTTTGACGGAGGAGGAGATCAACGTTATGCTTAAAGAGGTGGACT 360
Query 361 GGCGACGGCGACGGTGCCATCCGT-TTAGAAGAGCTTGCGAGTTGTGTCGTCTCTTTAGA 419
| ||||||||||||| | |||||| || ||||||||||||||| |||| |||||||||||
Sbjct 361 G-CGACGGCGACGGTACGATCCGTCTT-GAAGAGCTTGCGAGTCGTGTAGTCTCTTTAGA 418
Query 420 TCCCGCTCGTGACTCGACTGAGCTGAAGGAGACTTTTGAGTTCTTTGACGCGGATCGTGA 479
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 419 TCCGGCTCGTGACTCGACTGAGCTGAAGGAGACTTTCGAGTTCTTTGACGCGGATCGTGA 478
Query 480 CGGTTTGATCTCGGCTGATGAGCTTCTTA-GAGTTTTCTCGACCATTGGAGATGAACGGT 538
||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||
Sbjct 479 CGGTTTGATCTCGGCTGATGAGCTTCT-ACGAGTTTTCTCGACCATCGGAGATGAACGGT 537
Query 539 GCACGTTAGATGATTGCAAGCGTATGATAGCAGATGTTGACGAGGACGGTGATGGATTTG 598
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 538 GCACGTTAGATGATTGTAAGCGTATGATAGCAGATGTTGATGAGGACGGTGATGGTTTTG 597
Query 599 TATGCTTCAATGAGTTCTCACGAATGATGGATCTTCAGCGCTGATCTTCCCTTTTCtttt 658
| ||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 598 TGTGCTTCACTGAGTTCTCACGAATGATGGATCTCCAGCGTTGATCTTCCCTTTTCTTTT 657
Query 659 tttt 662
||||
Sbjct 658 TTTT 661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31999151639
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5