BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928711
Length=774
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10220.1 | Symbols: | tubulin folding cofactor B | chr3:316... 1273 0.0
> AT3G10220.1 | Symbols: | tubulin folding cofactor B | chr3:3161757-3164231
FORWARD LENGTH=1058
Length=1058
Score = 1273 bits (689), Expect = 0.0
Identities = 744/771 (96%), Gaps = 1/771 (0%)
Strand=Plus/Plus
Query 4 AGGTCTAGAGGTGaaaaaaaTGGCAACTTCGCGTTTACAGTTGGAAGGAGATGACTCTGT 63
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 AGGTCTAGAGGTG-AAAAAATGGCAACTTCGCGTTTACAGTTGGAAGGAGATGACTCTGT 173
Query 64 TCATCTACACATTACTCATGCCAACCTTAAAAGCTTCTCTGCGGATGTTCGTTTCTCTCC 123
||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||
Sbjct 174 ACATCTACACATTACTCACGCCAACCTTAAAAGCTTCTCTGCGGACGCTCGTTTCTCTCC 233
Query 124 ACAAATGAGTGTAGAAGCTGTGAAAGAAAAGCTATGGAAGAAATGTGGTACATCTGTTAA 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 GCAAATGAGTGTAGAAGCTGTGAAAGAAAAGCTATGGAAGAAATGTGGTACATCTGTTAA 293
Query 184 TTCCATGGCTTTAGAGCTCTATGATGACTCTGGCTCAAAGGTTGCAGTTCTCAGTGATAA 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 294 TTCCATGGCTTTAGAGCTCTATGATGACTCTGGCTCAAAGGTTGCAGTTCTCAGTGATGA 353
Query 244 TTCAAGACCTCTCGGTTTCTTCTCCCCTTTTGATGGGTTTCGCTTGCACATCATAGATCT 303
||| |||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 354 TTCTAGACCTCTTGGTTTCTTCTCTCCTTTTGATGGGTTTCGGTTACACATCATAGATCT 413
Query 304 TGACCCGTCGTCAGTCACAACTGGAGGCTGGCTTGAAGATACATCACTGGTTGAGAAGTA 363
|||||| || || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 414 TGACCCCTCCTCGGTCACAACTGGAGGCTGGCTTGAAGATACGTCACTGGTTGAGAAGTA 473
Query 364 TAACATCTCAGAGGAGGATTATGCTAAACGAACTGACAGTTTTAGGAAATTCAAAGAAAA 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TAACATCTCAGAGGAGGATTATGCTAAACGAACTGACAGTTTTAGGAAATTCAAAGAAAA 533
Query 424 AAGAGTGTCTCAAATTCCGGCTGCTGCTGAGGCTAAGACGAAGGAGAACTACATGGAAGA 483
||||| ||||||| ||||| ||||||||||||||||||||| |||||||| ||||||||
Sbjct 534 GAGAGTTTCTCAAAATCCGGTTGCTGCTGAGGCTAAGACGAAAGAGAACTATATGGAAGA 593
Query 484 TCTCTGTGCAAATATCAAGGTGGGAGATAGATGCCAAGTTGAGCCTGGGGAGAAAAGAGG 543
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 TCTCTGCGCAAATATCAAGGTGGGAGATAGATGCCAAGTTGAGCCTGGGGAGAAAAGAGG 653
Query 544 AATGGTCAAATATGTTGGACGAGCAGAGTCGTTGGGTCCTGGCTATTGGGTTGGAATTCA 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 AATGGTCAAATATGTTGGACGAGCAGAGTCGTTGGGTCCTGGCTATTGGGTTGGAATTCA 713
Query 604 GTATGATGAACCCCTTGGAAAACATGATGGCATGGTGAAAGGAACAAGATTCTTTGAGTG 663
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 GTATGATGAGCCCCTTGGAAAACATGATGGCATGGTGAAAGGAACAAGATTCTTTGAGTG 773
Query 664 CCCTCCGCTTCAAGGTGGTATGGTCAGGCCTGACAAAGTAAAGGTTGGTGATTATCCGGA 723
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CCCTCGGCTTCAAGGTGGTATGGTCAGGCCTGACAAAGTAAAGGTTGGTGATTATCCGGA 833
Query 724 AAGAGACCCTTTCGAGGAAGATGAAATATAAGATTTTCACGGAAGCATCAA 774
||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 834 AAGAGACCCTTTCGAGGAAGATGAAATATAAGACTTTCACGAAAGCATCAA 884
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37625376103
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5