BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928717
Length=968
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10290.1 | Symbols: | Nucleotide-sugar transporter family p... 1561 0.0
AT5G04160.1 | Symbols: | Nucleotide-sugar transporter family p... 1026 0.0
> AT3G10290.1 | Symbols: | Nucleotide-sugar transporter family
protein | chr3:3183403-3185348 REVERSE LENGTH=1200
Length=1200
Score = 1561 bits (845), Expect = 0.0
Identities = 940/983 (96%), Gaps = 18/983 (2%)
Strand=Plus/Plus
Query 1 ACCCAGATCAGAAA-CCAGATATGTCGTCTTCTTCATCTTCT---------C---CCCTC 47
|||||||||||||| || || ||||||||||||||||||||| | |||||
Sbjct 134 ACCCAGATCAGAAATCC-GACATGTCGTCTTCTTCATCTTCTCCGAAGAAACAAACCCTC 192
Query 48 TTCATATCATCCTTAATCATCCTCTGGTACACCTCCAACATCGGTGTTCTTCTCCTCAAC 107
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 193 TTCATATCATCCTTAATCATTCTCTGGTACACCTCCAACATCGGTGTTCTTCTCCTCAAC 252
Query 108 AAGTTCCTCCTCTCCAATTACGGATTCAAATTCCCCATTTTCCTCACAATGTGTCACATT 167
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 253 AAGTTCCTCCTCTCCAATTACGGATTCAAATTCCCTATTTTCCTCACAATGTGTCACATG 312
Query 168 TCCGCTTGCGCTATCCTCAGCTACGTCTCCATCGTCTTCCTCAAACTCGTCCCTCTCCAA 227
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 313 TCCGCTTGCGCTATCCTCAGCTACGTCTCCATCGTCTTCCTCAAGCTCGTCCCTCTCCAA 372
Query 228 TACCTCAAATCTCGTTCTCAGTTTCTCAAGGTTGCGACTCTCAGCATTGTCTTTTGTGCC 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 TACCTCAAATCTCGTTCTCAGTTTCTCAAGGTTGCGACTCTCAGCATTGTCTTTTGTGCC 432
Query 288 TCCGTTGTCGGTGGTAACATCTCCCTTCGTTATCTCCCTGTCTCGTTTAATCAAGCCGTT 347
|| || |||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 433 TCTGTCGTCGGTGGAAACATCTCCCTTCGTTATCTCCCTGTCTCCTTTAATCAAGCCGTT 492
Query 348 GGTGCTACGACGCCGTTTTTCACTGCACTCTTCGCTTATATCATGACCTTTAAAG-GAGA 406
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 493 GGTGCTACGACGCCGTTTTTCACTGCACTCTTCGCTTATATCATGACCTTT-AAGAGAGA 551
Query 407 AGCTTGGGTCACTTATGGTGCTCTCGTCCCCGTTGTTACCGGTGTCGTTATCGCCAGTGG 466
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 552 AGCTTGGGTCACTTATGGCGCTCTCGTCCCCGTTGTTACCGGTGTCGTTATCGCCAGTGG 611
Query 467 GGGTGAACCAGGTTTTCACTGGTTTGGATTCATTATGTGTATTAGTGCTACTGCAGCAAG 526
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 612 GGGTGAACCAGGTTTTCACTGGTTTGGATTCATTATGTGCATTAGTGCTACTGCAGCAAG 671
Query 527 AGCTTTTAAATCTGTTCTTCAAGACATCTTACTTTCTTCCGAGGGAGAAAAGCTGAATTC 586
||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||
Sbjct 672 AGCTTTTAAATCTGTTCTTCAAGGCATCTTACTTTCTTCCGAGGGAGAAAGGTTGAATTC 731
Query 587 GATGAATTTGATGCTGTACATGTCTCCAATAGCCGTCATGGCTCTTCTGCCCGTCACAAT 646
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 732 GATGAATTTGATGCTGTACATGTCTCCAATAGCCGTCATTGCTCTTCTGCCTGTCACAAT 791
Query 647 TTTTATGGAGCCGGATGTGATGAGTGTGACACTAACACTCGGAAGACAACATAAGTACAT 706
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 TTTTATGGAGCCGGACGTGATGAGTGTGACACTAACACTCGGAAGACAACATAAGTACAT 851
Query 707 GTGGT-TACTTCTGCTGGTTAACTCTGTAATGGCTTATTCAGCCAACTTGTTAAACTTTC 765
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 GTA-TATACTTCTGCTGGTTAACTCTGTAATGGCTTATTCAGCCAACTTGTTAAACTTTC 910
Query 766 TTGTAACCAAGCACACAAGCGCGCTTACCCTCCAGGTCCTTGGAAATGCTAAAGGAGCGG 825
| || ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 911 TGGTTACCAAGCACACAAGCGCACTTACCCTGCAGGTCCTTGGAAATGCTAAAGGAGCGG 970
Query 826 TTGCAGTTGTGATCTCGATCCTGCTTTTCCGAAACCCGGTAACGGTGATGGGAATTGGCG 885
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 TTGCAGTTGTGATATCGATCCTGCTTTTCCGAAACCCGGTAACGGTGATGGGAATTGGCG 1030
Query 886 GGTACAGTATAACCGTTCTCGGGGTTGTTGCTTATGGAGAGACTAAACGCAGGTTTAGAT 945
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1031 GGTACAGTATAACCGTTCTCGGGGTGGTTGCTTATGGAGAGACTAAACGCAGGTTTAGAT 1090
Query 946 GAAGCTCAAAGACTGAGATTTTC 968
|||||||||||||||| ||||||
Sbjct 1091 GAAGCTCAAAGACTGATATTTTC 1113
> AT5G04160.1 | Symbols: | Nucleotide-sugar transporter family
protein | chr5:1142782-1144912 REVERSE LENGTH=1316
Length=1316
Score = 1026 bits (555), Expect = 0.0
Identities = 799/917 (87%), Gaps = 15/917 (2%)
Strand=Plus/Plus
Query 43 CCCTCTTCATATC-ATCCTTAATCATCCTC-TGGTACACCTCCAACATCGGTGTTCTTCT 100
|||| |||||||| | | |||||||| ||| |||||| | || |||||||||||||||||
Sbjct 161 CCCTGTTCATATCGA-CATTAATCAT-CTCATGGTACTCTTCAAACATCGGTGTTCTTCT 218
Query 101 CCTCAACAAGTTCCTCCTCTCCAATTACGGATTCAAATTCCCCATTTTCCTCACAATGTG 160
||||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 219 CCTCAACAAGTTCCTTCTCTCGAATTACGGATTCAAATTCCCGATTTTTCTCACAATGTG 278
Query 161 TCACATTTCCGCTTGCGCTATCCTCAGCTACGTCTCCATCGTCTTCCTCAAACTCGTCCC 220
|||||| ||||||||||||||||| |||||| ||||||| || |||||||| || || ||
Sbjct 279 TCACATGTCCGCTTGCGCTATCCTTAGCTACATCTCCATTGTTTTCCTCAAGCTTGTTCC 338
Query 221 TCTCCAATACCTCAAATCTCGTTCTCAGTTTCTCAAGGTTGCGACTCTCAGCATTGTCTT 280
||||||| | ||||||||||||||||| || || |||||||| ||||||||||| |||||
Sbjct 339 TCTCCAACATCTCAAATCTCGTTCTCAATTCCTTAAGGTTGCTACTCTCAGCATCGTCTT 398
Query 281 TTGTGCCTCCGTTGTCGGTGGTAACATCTCCCTTCGTTATCTCCCTGTCTCGTTT-AATC 339
|||||| ||||| |||||||||||||||||||||||||| || |||||||| ||| ||||
Sbjct 399 TTGTGCTTCCGTCGTCGGTGGTAACATCTCCCTTCGTTACCTTCCTGTCTC-TTTCAATC 457
Query 340 AAGCCGTTGGTGCTACGACGCCGTTTTTCACTGCACTCTTCGCTTATATCATGACCTTTA 399
||||||| ||||||||||||||||||||||| || || || |||||| | ||||||||||
Sbjct 458 AAGCCGTCGGTGCTACGACGCCGTTTTTCACGGCTCTGTTTGCTTATCTTATGACCTTTA 517
Query 400 A-AGGAGAAGCTTGGGTCACTTATGGTGCTCTCGTCCCCGTTGTTACCGGTGTCGTTATC 458
| || |||||||||||| |||||||||||||||||||| || || |||||||||| |||
Sbjct 518 AGAG-AGAAGCTTGGGTTACTTATGGTGCTCTCGTCCCTGTCGTCGCCGGTGTCGTCATC 576
Query 459 GCCAGTGGGGGTGAACCAGGTTTTCACTGGTTTGGATTCATTATGTGTATTAGTGCTACT 518
|||||||||||||| ||||| |||||||||||||| ||||| ||||| ||||||||||||
Sbjct 577 GCCAGTGGGGGTGAGCCAGGATTTCACTGGTTTGGGTTCATAATGTGCATTAGTGCTACT 636
Query 519 GCAGCAAGAGCTTTTAAATCTGTTCTTCAAGACATCTTACTTTCTTCCGAGGGAGAAAAG 578
|| |||||||| ||||||||||||||||||| ||||||||||||||| ||||| |||||
Sbjct 637 GCGGCAAGAGCCTTTAAATCTGTTCTTCAAGGCATCTTACTTTCTTCAGAGGGGGAAAAA 696
Query 579 CTGAATTCGATGAATTTGATGCTGTACATGTCTCCAATAGCCGTCATGGCTCTTCTGCCC 638
|||| || |||||||||||| |||| |||||||| ||||| ||||| |||||||| |||
Sbjct 697 TTGAACTCAATGAATTTGATGTTGTATATGTCTCCCATAGCTGTCATTGCTCTTCTTCCC 756
Query 639 GTCACAATTTTTATGGAGCCGGATGTGATGAGTGTGACACTA-ACACTCGGAAGACAACA 697
|| || | |||||||| || || ||||| |||||||| || || || | || ||||||
Sbjct 757 GTTACGCTATTTATGGAACCAGACGTGATCAGTGTGAC-CTTGACGCTTGCAAAACAACA 815
Query 698 TAAGTACATGTGGTTACTTCTGCTGGTTAACTCTGTAATGGCTTATTCAGCCAA-CTTGT 756
| ||||||||||| ||||||| |||||||||||||| ||||||||||||||||| || ||
Sbjct 816 TCAGTACATGTGGATACTTCTTCTGGTTAACTCTGTCATGGCTTATTCAGCCAATCT-GT 874
Query 757 TAAACTTTCTTGTAACCAAGCACACAAGCGCGCTTACCCTCCAGGTCCTTGGAAATGCTA 816
| || ||||| || ||||| ||||||||||| || ||||||||||| |||||||||||||
Sbjct 875 TGAATTTTCTGGTTACCAAACACACAAGCGCCCTCACCCTCCAGGTTCTTGGAAATGCTA 934
Query 817 AAGGAGCGGTTGCAGTTGTGATCTCGATCCTGCT-TTTCCGAAACCCGGTAACGGTGATG 875
||||||| |||||||| ||||| || ||| || | |||| ||||||||| ||||| |||
Sbjct 935 AAGGAGCAGTTGCAGTGGTGATTTCTATCTTGATCTTTCA-AAACCCGGTTACGGTTATG 993
Query 876 GGAATTGGCGGGTACAGTATAACCGTTCTCGGGGTTGTTGCTTATGGAGAGACTAAACGC 935
||||||||||||||| |||||||| || ||||| ||||||||||||||||| ||||||
Sbjct 994 GGAATTGGCGGGTACTCCATAACCGTCCTTGGGGTGGTTGCTTATGGAGAGACAAAACGC 1053
Query 936 AGGTTTAGATGAAGCTC 952
|| |||||||||| |||
Sbjct 1054 AGATTTAGATGAA-CTC 1069
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47370800621
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5