BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928719
Length=959
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10300.3 | Symbols: | Calcium-binding EF-hand family protei... 1037 0.0
AT5G04170.1 | Symbols: | Calcium-binding EF-hand family protei... 582 2e-165
> AT3G10300.3 | Symbols: | Calcium-binding EF-hand family protein
| chr3:3186314-3188205 FORWARD LENGTH=1264
Length=1264
Score = 1037 bits (561), Expect = 0.0
Identities = 607/629 (97%), Gaps = 3/629 (0%)
Strand=Plus/Plus
Query 331 GGACATGGAGGAGGTTACGGGGCTCCTCCTCCTCCGCAAGCTTCTTATGGAAGTCCGTTT 390
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 525 GGACATGGAGGAGGTTACGGAG---CTCCTCCTCCGCAAGCTTCTTATGGAAGTCCGTTT 581
Query 391 GCGTCTCTGGTTCCGTCGGCGTTTCCTCCCGGAACAGATCCGAGCATCGTGGCTTGTTTC 450
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 582 GCGTCTCTGGTTCCGTCGGCGTTTCCTCCCGGAACAGATCCGAACATTGTGGCTTGTTTC 641
Query 451 CAAGCTGCGGATCGGGACAATAGTGGATTCATCGATGATAAGGAGCTTCAGGGAGCTCTC 510
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 642 CAAGCTGCGGATCGGGACAATAGTGGATTCATCGATGATAAGGAGCTTCAAGGAGCTCTA 701
Query 511 TCTTCGTATAATCAGAGCTTCAGCATAAGAACTGTTCATCTTCTTATGTATCTCTTCACC 570
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 702 TCTTCGTATAATCAGAGCTTCAGCATAAGAACTGTTCATCTCCTTATGTATCTATTCACC 761
Query 571 AACAGCAATGTCAGGAAGATTGGACCAAAAGAGTTTACTTCTCTTTTCTTTAGTCTTCAG 630
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 762 AACAGCAATGTCAGGAAGATTGGACCAAAAGAGTTTACTTCACTTTTCTTTAGTCTTCAG 821
Query 631 AGTTGGAGGTCTATCTTTGAAAGGTTTGATAAGGACAGAAGTGGTAGAATAGATACAAAC 690
| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 822 AATTGGAGGTCTATCTTTGAGAGGTTTGATAAGGACAGAAGCGGTAGAATAGATACAAAC 881
Query 691 GAGCTGAGAGATGCACTCATGAGCCTTGGGTTTTCAGTGTCTCCTGTGATTTTGGATCTG 750
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 882 GAGCTGAGAGATGCACTCATGAGCCTTGGGTTTTCTGTTTCTCCTGTGATTTTGGATCTG 941
Query 751 CTCGTTTCAAAGTTTGACAAAAGCGGTGGCAGGAACAGGGCTATCGAATATGACAATTTC 810
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 942 CTGGTTTCAAAGTTTGACAAAAGCGGAGGCAGGAACAGGGCTATCGAATATGACAATTTC 1001
Query 811 ATCGAGTGTTGTTTGACTGTAAAGGGGCTGACCGAGAAGTTCAAGGAGAAGGATACGGCG 870
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1002 ATCGAGTGTTGTTTGACTGTAAAGGGGCTCACCGAGAAGTTCAAGGAGAAGGATACGGCG 1061
Query 871 TTATCAGGCTCAGCTACTTTCAATTACGAGAACTTCATGCTCACTGTTTTACCATTCCTC 930
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 TTATCAGGCTCAGCTATTTTCAATTACGAGAACTTCATGCTCACTGTTTTACCATTCCTC 1121
Query 931 GTCGCTTGAGTGATTGTTTTCTTTTCTTT 959
|||||||||||||||||||| |||| |||
Sbjct 1122 GTCGCTTGAGTGATTGTTTTTTTTTTTTT 1150
Score = 477 bits (258), Expect = 8e-134
Identities = 300/320 (94%), Gaps = 3/320 (1%)
Strand=Plus/Plus
Query 6 TCTTCTTCTTCTCACCATGTCTGGTTATCCTCCATCGAGCCAAGGTTACGGTTACGGCGG 65
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 107 TCTTCTTCTTCTCACCATGTCTGGTTATCCTCCATCAAGCCAAGGTTACGGTTACGGCGG 166
Query 66 TAATCCACCACCGCCTCAGCCACCGTACGGATCATCCGGCAACAATCCTCCTCCGTACGG 125
|||||||||||| ||||||||||||||||||||| ||||||| || ||||||||||||||
Sbjct 167 TAATCCACCACCTCCTCAGCCACCGTACGGATCAACCGGCAATAACCCTCCTCCGTACGG 226
Query 126 ATCATCCGGCAACAA---TCCTCCTCCGTACGGATCATCAGCCTCCTCACCGTACGCTGT 182
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 227 ATCATCCGGCAGCAATCCTCCTCCTCCGTACGGATCATCAGCCTCCTCACCGTACGCAGT 286
Query 183 TCCCTACGGAGCTCAGCCCGCGCCTTACGGTGCACCACCGTCAGCACCGTACGCGTCTCC 242
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 287 TCCCTACGGAGCTCAGCCCGCTCCTTACGGTGCACCACCGTCAGCACCGTACGCGTCTCT 346
Query 243 TCCAGGAGACCATACTAAGCCGCAGAAAGAAAAACCTTACGGCGGCGCTTACGGATCTCC 302
|||||||||||||| ||||||||| ||||| |||||| |||||| | | |||||||||||
Sbjct 347 TCCAGGAGACCATAATAAGCCGCACAAAGAGAAACCTCACGGCGCCTCCTACGGATCTCC 406
Query 303 ATCTCCCGGTGGTTACGGTG 322
|||||||||||| |||||||
Sbjct 407 ATCTCCCGGTGGCTACGGTG 426
> AT5G04170.1 | Symbols: | Calcium-binding EF-hand family protein
| chr5:1145431-1147781 FORWARD LENGTH=1475
Length=1475
Score = 582 bits (315), Expect = 2e-165
Identities = 495/582 (85%), Gaps = 12/582 (2%)
Strand=Plus/Plus
Query 360 TCCTCCGCAAGCTTCTTATGGAAGTCCGTTTGCGTCTCTGGTTCCGTC-GGCGTTTCCTC 418
|||||||||||| |||||||||||||| ||||| |||||| ||||||| || ||| |||
Sbjct 634 TCCTCCGCAAGCCTCTTATGGAAGTCCTTTTGCTTCTCTGATTCCGTCAGG-TTTTGCTC 692
Query 419 CCGGAACAGATCCGAGCATCGTGGCTTG-TTTCCAAGCTGCGGATCGGGACAATAGTGGA 477
| || |||||||||| || |||||||| ||| || ||||| |||| || ||||||
Sbjct 693 CGGGGACAGATCCGAATATAGTGGCTTGCTTT-CAGGCTGCAGATCAAGATGGTAGTGGC 751
Query 478 TTCATCGATGATAAGGAGCTTCAGGGAGCTCTCTCTTCGTAT-AATCAGAGCTTCAGCAT 536
|| || ||||||||||||||||| |||||||||||||| ||| || ||||| ||||| ||
Sbjct 752 TTTATTGATGATAAGGAGCTTCAAGGAGCTCTCTCTTCTTATCAA-CAGAGATTCAGTAT 810
Query 537 AAGAACTGTTCATCTTCTTATGTATCTCTTCACCAACAGCAATGTC-AGGAAGATTGGAC 595
|||||||||||||||||||||||||| |||||||| ||||||| | | ||| || ||||
Sbjct 811 GAGAACTGTTCATCTTCTTATGTATCTATTCACCAATAGCAATG-CTATGAAAATCGGAC 869
Query 596 CAAAAGAGTTTACTTCTCTTTTCTTTAGTCTTCAGAGTTGGAGGTCTATCTTTGAAAGGT 655
| || ||||||||| | ||||||| |||||||||| |||||||| || ||||| ||||
Sbjct 870 CTAAGGAGTTTACTGCACTTTTCTACAGTCTTCAGAACTGGAGGTCCATTTTTGAGAGGT 929
Query 656 TTGATAAGGACAGAAGTGGTAGAATAGATACAAACGAGCTGAGAGATGCACTCATGAGCC 715
|||||||||||| ||||| ||||||||| || |||||||||||||| || ||||||
Sbjct 930 CTGATAAGGACAGGAGTGGAAGAATAGATGTGAATGAGCTGAGAGATGCGCTTTTGAGCC 989
Query 716 TTGGGTTTTCAGTGTCTCCTGTGATTTTGGATCTGCTCGTTTCAAAGTTTGACAAAAGCG 775
|||||||||| || ||||||||| ||||||||||||| ||||| ||||||||||||||||
Sbjct 990 TTGGGTTTTCGGTTTCTCCTGTGGTTTTGGATCTGCTGGTTTCCAAGTTTGACAAAAGCG 1049
Query 776 GTGGCAGGAACAGGGCTATCGAATATGACAATTTCATCGAGTGTTGTTTGACTGTAAAGG 835
| |||| |||||||||||||||||||||||||||||| ||||| ||| | ||||| ||||
Sbjct 1050 GAGGCAAGAACAGGGCTATCGAATATGACAATTTCATTGAGTGCTGTCTCACTGTTAAGG 1109
Query 836 GGCTGACCGAGAAGTTCAAGGAGAAGGATACGGCGTTA-TCAGGCTCAGCTACTTTCAAT 894
||||||| |||||||||||||||||||| || || | | ||||||||||||||||||||
Sbjct 1110 GGCTGACAGAGAAGTTCAAGGAGAAGGACACAGCAT-ACTCAGGCTCAGCTACTTTCAAC 1168
Query 895 TACGAGAA-CTTCATGCTCACTGTTTTACCATTCCTCGTCGC 935
||||| || |||||||||||| || | || |||||| ||||
Sbjct 1169 TACGA-AAGCTTCATGCTCACCGTCCTCCCCTTCCTCATCGC 1209
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46918693298
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5