BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928729
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10400.1 | Symbols: U11/U12-31K | RNA recognition motif and ... 1199 0.0
> AT3G10400.1 | Symbols: U11/U12-31K | RNA recognition motif and
CCHC-type zinc finger domains containing protein | chr3:3232608-3233685
FORWARD LENGTH=1078
Length=1078
Score = 1199 bits (649), Expect = 0.0
Identities = 763/815 (94%), Gaps = 20/815 (2%)
Strand=Plus/Plus
Query 18 AAGTGGAAATGAAGAAGAAGAAGATTCATCGCAGCGACGATGAAGAGGACGACACTTTCT 77
|||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct 21 AAGTGGAAATGAAGAAGAGGAAGATTCATCATAGCGACGACGAAGAGGACGACACTTTCT 80
Query 78 ACTATCGCTACTCTTCCGTCGCAGCACCACCACCTTCGAACCCTAAACAACC-TTCTTCC 136
|||||||||| || |||||||| ||||||||||||||||||||||||| ||| ||||
Sbjct 81 ACTATCGCTATTCCTCCGTCGCGGCACCACCACCTTCGAACCCTAAAC-ACCAACCTTCT 139
Query 137 TCCTCCGCGAAATCATCAGCTCCCGGCGGCGGATCTGGCGGCTTAGCTCCTTCAAAATCA 196
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 TCCTCCGCCAAATCATCAGCTCCCGGCGGCGGATCTGGCGGCTTAGCTCCTTCAAAATCA 199
Query 197 ACACTCTACGTCTCCAATCTCGATTTCTCCCTCACCAATTCCGACATCCACACTCTCTTC 256
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 200 ACACTCTACGTCTCCAATCTCGATTTCTCCCTCACCAATTCCGACATCCACACTCTATTC 259
Query 257 TCCACCTTCGGCAAGGTCGCGAGAGTCACTGTTCTCAAAGATCGCCACACTCGCCAATCC 316
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 TCCACTTTCGGCAAGGTCGCGAGAGTCACTGTTCTCAAAGATCGCCACACTCGCCAATCT 319
Query 317 CGTGGCGTCGCGTTCGTGCTCTACGTTTCTCGTGAAGACGCGGCTAAAGCGGCGCGTTCT 376
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 320 CGTGGCGTCGCGTTCGTGCTCTACGTCTCTCGTGAAGACGCGGCTAAAGCGGCGCGTTCT 379
Query 377 ATGGACGCGAAGATTCTTAACGGTCGGAAATTGACGGTTTCGATCGCTGCCGATAATGGA 436
|||||||| ||||||||||| ||||||||| |||||||||||||||| || |||||||||
Sbjct 380 ATGGACGCCAAGATTCTTAATGGTCGGAAACTGACGGTTTCGATCGCCGCTGATAATGGA 439
Query 437 CGTGCGTCGGAGTTTATTAAGAAGAGAGTTTACAAGGATAAATCCAGGTGTTACGAGTGT 496
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 440 CGTGCGTCGGAGTTTATTAAGAAGAGAGTTTACAAGGATAAATCGAGGTGTTACGAGTGT 499
Query 497 GGAGACGAAGGGCATCTCTCGTATGAGTGCCCTAAAAATCAGTTAGGTCCAAGGGAGAGA 556
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 500 GGAGACGAAGGGCATCTTTCGTACGAGTGCCCTAAAAATCAGTTAGGTCCAAGGGAGAGA 559
Query 557 CCACCGCCGCCGAAGAAAAGGGGGCGGCGGAAGGAGGATGAAGGTGAGGCTGAGGAAATT 616
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 560 CCACCGCCGCCGAAGAAAAGGGGGCGGCGGAAGGAGGAGGAAGGTGAGGCTGAGGAAATT 619
Query 617 AGGGATTGGTCTGCGGCGCCG--T-CGTTGG---------AGG-G-A-TTTGAGGAGGAG 661
|| ||||||||||||| || | |||||| ||| | | ||||||||||||
Sbjct 620 AG---TTGGTCTGCGGCGGCGCCTTCGTTGGCTGTGGCGGAGGAGGAATTTGAGGAGGAG 676
Query 662 AATTGGGCTTCGGTGGTGGACAATGAAGCCggagagaggttgagaatgagagaagcagag 721
|||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||
Sbjct 677 AATTGGGCTTCGGTGGTGGATAATGAAGCTGGAGAGAGGTTGAGAAAAAGAGAAGCAGAG 736
Query 722 gaagaagaagagaggaggaagaagagaaaggagaagaaagTTAGCTACTTTAGTGATGAG 781
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 737 GAAGAAGAAGAGAGGAGGATGAAGAGAAAGGAGAAGAAAGTTAGCTACTTTAGTGATGAG 796
Query 782 AGTGATGATGAAGATTAGCTTCTTTGATCCATTTT 816
|||||||||||||||||||||||| ||| ||||||
Sbjct 797 AGTGATGATGAAGATTAGCTTCTTAGATTCATTTT 831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39885912718
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5