BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928746

Length=520
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G10520.1 | Symbols: AHB2, GLB2, ARATH GLB2, NSHB2, ATGLB2, H...   887    0.0  


> AT3G10520.1 | Symbols: AHB2, GLB2, ARATH GLB2, NSHB2, ATGLB2, 
HB2 | haemoglobin 2 | chr3:3276226-3277860 REVERSE LENGTH=862
Length=862

 Score =  887 bits (480),  Expect = 0.0
 Identities = 506/518 (98%), Gaps = 3/518 (1%)
 Strand=Plus/Plus

Query  3    AAAGAAAGAGAGAAAGAGATGGGAGAGATTGGGTTTACAGAGAAGCAAGAAGCTTTGGTG  62
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  78   AAAGAAAGAGAGAAAGAGATGGGAGAGATTGGGTTTACAGAGAAGCAAGAAGCTTTGGTG  137

Query  63   AAGGAATCGTGGGAGATACTGAAACAAGACATCCCCAAATACAGCCTTCACTTCTTCTCA  122
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  138  AAGGAATCGTGGGAGATACTGAAACAAGACATCCCCAAATACAGCCTTCACTTCTTCTCA  197

Query  123  CAGATATTGGAGATAGCACCAGCAGCAAAGGGCTTGTTCTCTTTCCTAAGAGACTCAGAT  182
            |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  198  CAGATACTGGAGATAGCACCAGCAGCAAAAGGCTTGTTCTCTTTCCTAAGAGACTCAGAT  257

Query  183  GAAGTCCCTCACAACAATCCTAAACTCAAAGCTCATGCTGTTAAAGTCTTCAAGATGACA  242
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  258  GAAGTCCCTCACAACAATCCTAAACTCAAAGCTCATGCTGTTAAAGTCTTCAAGATGACA  317

Query  243  TGTGAAACAGCTATACAGCTGAGGGAGAAAGGAAAGGTGGTAGTGGCTGACACAACCCTC  302
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  318  TGTGAAACAGCTATACAGCTGAGGGAGGAAGGAAAGGTGGTAGTGGCTGACACAACCCTC  377

Query  303  CAATACTTGGGCTCAATTCATCTCAAAAGCGGCGTTATTGACCCTCACTTCGAGGTGGTG  362
            ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  378  CAATATTTAGGCTCAATTCATCTCAAAAGCGGCGTTATTGACCCTCACTTCGAGGTGGTG  437

Query  363  AAAGAAGCTTTGCTAAGGACATTGAAAGAGGGGTTGGGGGAGAAATACAATGAAGAAGTG  422
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  438  AAAGAAGCTTTGCTAAGGACATTGAAAGAGGGGTTGGGGGAGAAATACAATGAAGAAGTG  497

Query  423  GAAGGAGCTTGGTCTCAAGCTTATGATCACTTGGCTTTAGCCATTAAGACCGAGATGAAA  482
            ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  498  GAAGGTGCTTGGTCTCAAGCTTATGATCACTTGGCTTTAGCCATCAAGACCGAGATGAAA  557

Query  483  CAAGAAGATCAGTCATAAAACCTTAATGATCATTTGGG  520
            ||||||||   ||||||||||| || ||||||||||||
Sbjct  558  CAAGAAGA---GTCATAAAACCCTATTGATCATTTGGG  592



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24865902765


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5