BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928751
Length=1501
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10540.1 | Symbols: | 3-phosphoinositide-dependent protein ... 2529 0.0
AT5G04510.1 | Symbols: PDK1, ATPDK1 | 3'-phosphoinositide-depen... 1628 0.0
AT3G10575.1 | Symbols: | pseudogene, similar to putative 3-pho... 305 6e-82
> AT3G10540.1 | Symbols: | 3-phosphoinositide-dependent protein
kinase | chr3:3289695-3292702 FORWARD LENGTH=1955
Length=1955
Score = 2529 bits (1369), Expect = 0.0
Identities = 1458/1502 (97%), Gaps = 1/1502 (0%)
Strand=Plus/Plus
Query 1 AATGTAGAAGAAGTTGGGAGATGTTGACAATGGAGAAGGAATTTGATTCAAAGCTTGCTC 60
||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 202 AATGTAGAACAAGTTTGGAGATGTTGACAATGGACAAGGAATTTGATTCAAAGCTTACTC 261
Query 61 TTCAAGGGAATTCATCTTCTAATGGTGCAACTATTTCCAGAAGCAAAAGCTTCGCCTTTA 120
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 262 TTCAAGGGAATTCATCTTCAAATGGTGAAACTATTTCCAGAAGCAAAAGCTTCGCCTTTA 321
Query 121 AGGCTCCTCAGGAGAATTTCACCTACCATGATTTCGAGCTCGGCAAGATCTATGGCGTTG 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 322 AGGCTCCTCAGGAGAATTTCACTTACCATGATTTCGAGCTCGGCAAGATCTATGGCGTTG 381
Query 181 GCTCTTATTCAAAGGTTGTTAGGGCGAAGAAGAAGGATAATGGAACTGTGTATGCCTTAA 240
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 382 GCTCTTATTCTAAGGTTGTTAGGGCGAAGAAGAAGGATAATGGAACTGTGTATGCCTTGA 441
Query 241 AGATCATGGACAAAAAGTTTATCACCAAGGAGAATAAAACTGCTTATGTCAAATTGGAGA 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 442 AGATCATGGACAAAAAGTTTATCACCAAGGAGAATAAAACAGCTTATGTCAAATTGGAGA 501
Query 301 GGATTGTTCTTGATCAACTCGAACATCCCGGGATTGTGAAACTCTTCTTTACTTTTCAAG 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 502 GGATTGTTCTTGATCAACTCGAACATCCCGGGATTGTGAAACTCTTCTTTACGTTTCAGG 561
Query 361 ATACACAATCACTATACATGGCGCTTGAATCTTGCGAAGGTGGGGAACTTTTCGACCAAA 420
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 562 ATACACAATCACTATACATGGCGCTTGAGTCTTGTGAAGGTGGGGAACTTTTCGACCAAA 621
Query 421 TCACCAGAAAAGGTCGTCTGTCAGAGGATGAAGCTCGGTTCTACAGTGCAGAAGTTGTGG 480
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 622 TCACCAGAAAAGGTCGTCTATCTGAGGATGAAGCTCGGTTCTACAGTGCAGAAGTTGTTG 681
Query 481 ACGCTCTTGAGTATATACATAATATGGGACTGATACATCGAGATATCAAGCCAGAGAATC 540
| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 682 ATGCTCTTGAGTATATACATAATATGGGACTGATACATCGAGATATTAAGCCGGAGAATC 741
Query 541 TGTTGTTAACTTCAGATGGACATATTAAGATTGCCGATTTTGGTAGCGTAAAGCCAATGC 600
|||||||||||| |||||| || || |||||||| |||||||||||||||||||||||||
Sbjct 742 TGTTGTTAACTTTAGATGGGCACATAAAGATTGCTGATTTTGGTAGCGTAAAGCCAATGC 801
Query 601 AAGACAGCCAAATCACAGTGCTTCCTAACGCGGCTTCCGATGATAAGGCGTGCACTTTTG 660
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 802 AAGACAGCCAAATCACAGTGCTTCCTAATGCGGCTTCTGATGATAAGGCGTGCACTTTTG 861
Query 661 TCGGGACGGCTGCATATGTTCCTCCTGAAGTTCTAAACTCCTCTCCAGCAACTTTCGGAA 720
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 862 TCGGGACGGCTGCATATGTTCCTCCTGAAGTTCTAAACTCCTCTCCAGCAACGTTCGGAA 921
Query 721 ATGATCTCTGGGCACTCGGCTGCACTCTGTACCAAATGCTTTCAGGAACTTCCCCATTCA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 ATGATCTCTGGGCACTCGGCTGCACTCTGTACCAAATGCTTTCAGGAACTTCCCCATTCA 981
Query 781 AAGATGCAAGCGAATGGCTAATTTTCCAAAGAATCATAGCTAGAGATATAAAGTTTCCAA 840
| |||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 982 AGGATGCAAGTGAATGGCTGATTTTCCAAAGAATTATAGCTAGAGATATAAAGTTTCCAA 1041
Query 841 ATCATTTCTCAGAAGCAGCAAGAGACCTCATCGACCGATTGCTAGATACAGATCCTAGTA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1042 ATCATTTCTCAGAAGCAGCAAGAGACCTCATCGACCGATTGCTAGATACAGATCCTAGTA 1101
Query 901 GAAGACCAGGAGCTGGATCAGAAGGTTATGCTTCTCTCAAGAGACATCCTTTCTTCAAGG 960
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1102 GAAGACCAGGAGCTGGATCAGAAGGTTATGATTCTCTCAAGAGACATCCTTTCTTCAAGG 1161
Query 961 GAGTTGACTGGAAGAACCTAAGGTCACAAACTCCTCCAAAACTAGCTCCAGATCCTGCGT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 GAGTTGACTGGAAGAACCTAAGGTCACAAACTCCTCCAAAACTAGCTCCAGATCCTGCGT 1221
Query 1021 CTCAATCAGCATCTCCTGAGAGGGACGGTTCTCCATGGAACCCAACACATGTTGGAGATA 1080
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1222 CTCAATCAGCATCTCCTGAGAGGGACGGTTCTCCATGGAATCCAACACATGTTGGAGATA 1281
Query 1081 CATCAGTCTTGCAGAACGATGGACACAACGGACTCTCTGAATCTTCAGGTTCCATAACTC 1140
| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1282 CCTCAGTCTTGCAGAACGATGGACACAATGGACTCTCTGAATCCTCAGGTTCCATAACTC 1341
Query 1141 GGCTTGCCTCCATAGACTCTTTTGATTCGAGATGGCAACAGTTTCTAGAACCGGGAGAAT 1200
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1342 GGCTTGCCTCCATAGACTCTTTCGATTCAAGATGGCAACAGTTTCTAGAACCGGGAGAAT 1401
Query 1201 CGGTTCTAATGATATCAGCAGTGAAGAAGCTACAGAAAATCACAAGTAAGAAGGTGCAGC 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1402 CGGTTCTAATGATATCAGCAGTGAAGAAGCTACAGAAAATCACAAGTAAGAAGGTGCAGC 1461
Query 1261 TAATACTCACCAACAAACCAAGACTGATATACGTTGACCCATCAAAGCTTGTAGTAAAAG 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1462 TAATACTCACCAACAAACCAAGACTGATATACGTTGACCCATCAAAGCTTGTAGTAAAAG 1521
Query 1321 GGAACATTATCTGGTCTGATAACTCCAACGACCTCAACGTTCAAGTCTCAAGTCCTTCCC 1380
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1522 GGAATATTATCTGGTCTGATAACTCCAACGACCTCAACGTTCAAGTCTCAAGTCCTTCCC 1581
Query 1381 ATTTCAAGATTTGCACACCGAAGAAAGTTTTATCGTTTGAAGATGCGAAACAAAGAGCTT 1440
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1582 ATTTCAAGATTTGCACACCGAAGAAAGTTTTATCGTTTGAAGATGCGAAGCAAAGAGCTT 1641
Query 1441 TGCAGTGGAAAAAGGCAATCGAAACTCTTCAAAACCGTTGAGACTCTT-GCTGATGATGT 1499
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||
Sbjct 1642 TGCAGTGGAAAAAGGCAATCGAAACTCTTCAAAACCGTTGAGACTCGTAGCTGATGGTGT 1701
Query 1500 CA 1501
||
Sbjct 1702 CA 1703
> AT5G04510.1 | Symbols: PDK1, ATPDK1 | 3'-phosphoinositide-dependent
protein kinase 1 | chr5:1286866-1289908 FORWARD LENGTH=2072
Length=2072
Score = 1628 bits (881), Expect = 0.0
Identities = 1306/1508 (87%), Gaps = 42/1508 (3%)
Strand=Plus/Plus
Query 5 TAGAAGAAGTTGGGAGATGTTGACAATGGAGAAGGAATTTGATTCAAAGCTTGCTCTTCA 64
|||||||| |||| |||||| |||||||||| ||||||||||||||||||| ||||||
Sbjct 355 TAGAAGAA-AAGGGAAATGTTGGCAATGGAGAAAGAATTTGATTCAAAGCTTGTTCTTCA 413
Query 65 AGGGAATTCATCTTCTAATGGTGC-AACTATTTCCAGAAGCAAAAGCTTCGCCTTTAAGG 123
|||||| ||||| | || ||||| || | |||| ||||||||||||||| ||||||| |
Sbjct 414 AGGGAACTCATC--C-AACGGTGCTAA-TGTTTCTAGAAGCAAAAGCTTCTCCTTTAAAG 469
Query 124 CTCCTCAGGAGAATTTCACCTA-CCATGATTTCGAGCTCGGCAAGATCTATGGCGTTGGC 182
||||||| || ||||||||| | |||||||||||| | |||||||||||||| |||||
Sbjct 470 CTCCTCAAGAAAATTTCACC-AGCCATGATTTCGAATTTGGCAAGATCTATGGTGTTGGT 528
Query 183 TCTTATTCAAAGGTTGTTAGGGCGAAGAAGAAGGATAA-TGGAACTGTGTATGCCTTAAA 241
||||| || |||||||||||||| ||||||||||| || ||||||||||||||| |||||
Sbjct 529 TCTTACTCTAAGGTTGTTAGGGCAAAGAAGAAGGA-AACTGGAACTGTGTATGCTTTAAA 587
Query 242 GATCATGGACAAAAAGTTTATCACCAAGGAGAATAAAACTGCTTATGTCAAATTGGAGAG 301
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 588 GATTATGGACAAAAAGTTTATCACCAAGGAGAATAAAACTGCTTATGTGAAATTGGAAAG 647
Query 302 GATTGTTCTTGATCAACTCGAACATCCCGGGATTGTGAAACTCTT-CTTTACTTTTCAAG 360
|||||||||||||||||| |||||||| ||||| | ||||| || ||| || |||||||
Sbjct 648 GATTGTTCTTGATCAACTTGAACATCCTGGGATCATTAAACT-TTACTTCACGTTTCAAG 706
Query 361 ATACA-CAATCACTATACATGGCGCTTGAATCTTGCGAAGGTGGGGAACTTTTCGACCAA 419
| ||| | |||||||| ||||| ||||||||||| || ||||| || ||||||||||||
Sbjct 707 ACACATCC-TCACTATATATGGCACTTGAATCTTGTGAGGGTGGCGAGCTTTTCGACCAA 765
Query 420 ATCACCAGAAAAGGTCGTCTGTCAGAGGATGAAGCTCGGTTCTACAGTGCAGAAGTTGTG 479
|| |||||||||||||| || || |||||||||||||||||||||| |||||||||||||
Sbjct 766 ATAACCAGAAAAGGTCGGCTATCGGAGGATGAAGCTCGGTTCTACACTGCAGAAGTTGTG 825
Query 480 GACGCTCTTGAGTATATACATAATATGGGACTGATACATCGAGATATCAAGCCAGAGAAT 539
|| ||||||||||||||||||| |||||||||||| ||||||||||| ||||| ||||||
Sbjct 826 GATGCTCTTGAGTATATACATAGTATGGGACTGATTCATCGAGATATTAAGCCGGAGAAT 885
Query 540 CTGTTGTTAACTTCAGATGGACATATTAAGATTGCCGATTTTGGTAGCGTAAAGCCAATG 599
|||||| | |||||||||||||| ||||||||||| |||||||| || |||||||| |||
Sbjct 886 CTGTTGCTGACTTCAGATGGACACATTAAGATTGCGGATTTTGGAAGTGTAAAGCCGATG 945
Query 600 CAAGACAGCCAAATCACAGTGCTTCCTAACGCGGCTTCCGATGATAAGGCGTGCACTTTT 659
|| || ||||| |||||||| || ||||| || ||||| || ||||||||||||||||||
Sbjct 946 CAGGATAGCCAGATCACAGTTCTACCTAATGCAGCTTCTGACGATAAGGCGTGCACTTTT 1005
Query 660 GTCGGGACGGCTGCATATGTTCCTCCTGAAGTTCTAAACTCCTCTCCAGCAACTTTCGGA 719
|||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 1006 GTCGGGACTGCTGCATATGTTCCTCCAGAAGTTCTCAACTCCTCTCCCGCAACTTTCGGG 1065
Query 720 AATGATCTCTGGGCACTCGGCTGCACTCTGTACCAAATGCTTTCAGGAACTTCCCCATTC 779
|||||||| ||||| |||||||||||||| || || |||||||| || |||||||||||
Sbjct 1066 AATGATCTTTGGGCTCTCGGCTGCACTCTCTATCAGATGCTTTCGGGGACTTCCCCATTT 1125
Query 780 AAAGATGCAAGCGAATGGCTAATTTTCCAAAGAATCATAGCTAGAGATATAAAGTTTCCA 839
||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||| |||
Sbjct 1126 AAAGATGCAAGTGAATGGCTGATTTTCCAAAGAATTATAGCCAGAGATATAAAGTTCCCA 1185
Query 840 AATCATTTCTCAGAAGCAGCAAGAGACCTCATCGACCGATTGCTAGATACAGATCCTAGT 899
|||||||| ||||||||||||||||||||||||||||| ||||| ||||| || || ||
Sbjct 1186 AATCATTTTTCAGAAGCAGCAAGAGACCTCATCGACCGGTTGCTGGATACCGAGCCAAGC 1245
Query 900 AGAAGACCAGGAGCTGGATCAGAAGGTTATGCTT-CTCTCAAGAGACATCCTTTCTTCAA 958
||||| ||||| ||||| ||||||||||||| || |||| ||||||||||||||||| ||
Sbjct 1246 AGAAGGCCAGGTGCTGGCTCAGAAGGTTATG-TTGCTCTTAAGAGACATCCTTTCTTTAA 1304
Query 959 GGGAGTTGACTGGAAGAACCTAAGGTCACAAACTCCTCCAAAACTAGCTCCAGATCCTGC 1018
||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 1305 TGGAGTTGACTGGAAGAATCTAAGGTCCCAGACTCCTCCAAAACTAGCTCCAGATCCTGC 1364
Query 1019 GTCTCA-ATCAGCATCTCCTGAGAGGGA---C------GGTTCTCCATGGAACCCAACAC 1068
|||||| | |||||||||| |||||||| | |||||||||||||||| ||||
Sbjct 1365 GTCTCAGA-CAGCATCTCCCGAGAGGGATGACACACATGGTTCTCCATGGAACCTGACAC 1423
Query 1069 ATGTTGGAGATACATCAGTCTTGCAGAACGATGGACACAACGG-------AC-TCT-CTG 1119
|| |||||||| | | || | |||||||| || |||| | || ||| |||
Sbjct 1424 ATATTGGAGATTCTTTAGCCACACAGAACGAGGGGCACAGTGCTCCTCCTACATCTTCTG 1483
Query 1120 AATCTTCAGGTTCCATAACTCGGCTTGCCTCCATAGACTCTTTTGATTCGAGATGGCAAC 1179
|||| || |||||||||||||| ||||| || ||||||||||||||||| ||||||||||
Sbjct 1484 AATCATCGGGTTCCATAACTCGACTTGCTTCAATAGACTCTTTTGATTCAAGATGGCAAC 1543
Query 1180 AGTTTCTAGAACCGGGAGAATCGGTTCTAATGATATCAGCAGTGAAGAAGCTACAGAAAA 1239
||||| |||| || |||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 1544 AGTTTTTAGAGCCAGGAGAATCGGTTCTGATGATATCAGCGGTGAAGAAGCTTCAGAAAA 1603
Query 1240 TCACAAGTAAGAAGGTGCAGCTAATACTCACCAACAAACC-AAGACTGATATACGTTGAC 1298
| || || |||||||||||||||||||||||||||||||| ||| ||||| || || |||
Sbjct 1604 TAACGAGCAAGAAGGTGCAGCTAATACTCACCAACAAACCCAAG-CTGATCTATGTCGAC 1662
Query 1299 CCATCAAAGCTTGTAGTAAAAGGGAACATTATCTGGTCTGATAACTCCAACGACCTCAAC 1358
|| ||||| || || || ||||| |||||||| |||||||||||||| || |||||||||
Sbjct 1663 CCGTCAAAACTAGTTGTGAAAGGAAACATTATATGGTCTGATAACTCGAATGACCTCAAC 1722
Query 1359 GTTCAAGTCTCAAGTCCTTCCCATTTCAAGATTTGCACACCGAAGAAAGTTTTATCGTTT 1418
||| |||| | || ||||| ||||||||||||||||| || ||||| |||||||| |||
Sbjct 1723 GTTGTAGTCACTAGCCCTTCACATTTCAAGATTTGCACGCCAAAGAAGGTTTTATCATTT 1782
Query 1419 GAAGATGCGAAACAAAGAGCTTTGCAGTG-G-AAAAAGGCAATCGAAACTCTTCAAAACC 1476
||||| || ||||| ||||||| ||||| | |||||||||||||| |||||||| ||||
Sbjct 1783 GAAGACGCAAAACAGAGAGCTT--CAGTGTGGAAAAAGGCAATCGAGACTCTTCAGAACC 1840
Query 1477 GTTGAGAC 1484
| ||||||
Sbjct 1841 GCTGAGAC 1848
> AT3G10575.1 | Symbols: | pseudogene, similar to putative 3-phosphoinositide-dependent
protein kinase-1, similar to 3-phosphoinositide-dependent
protein kinase-1 GB:AAD37165 (Arabidopsis
thaliana); blastp match of 79% identity and 7.5e-31 P-value
to GP|19571127|dbj|BAB86551.1||AP003566 putative 3-phosphoinositide-dependent
protein kinase-1 {Oryza sativa (japonica
cultivar-group)} | chr3:3306508-3307035 FORWARD LENGTH=528
Length=528
Score = 305 bits (165), Expect = 6e-82
Identities = 177/183 (97%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 193 AGGTTGTTAGGGCGAAGAAGAAGGATAATGGAACTGTGTATGCCTTAAAGATCATGGACA 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 AGGTTGTTAGGGCGAAGAAGAAGGATAATGGAACTGTGTATGCCTTAAAGATCATGGACA 372
Query 253 AAAAGTTTATCACCAAGGAGAATAAAACTGCTTATGTCAAATTGGAGAGGATTGTTCTTG 312
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 373 AAAAGTTTATCACCAAAGAGAATAAAACCGCTTATGTCAAATTGGAGAGGATTGTTCTTG 432
Query 313 ATCAACTCGAACATCCCGGGATTGTGAAACTCTTCTTTACTTTTCAAGATACACAATCAC 372
|||||||||||||||||| |||||||||||| ||||||||||||||||| || |||||||
Sbjct 433 ATCAACTCGAACATCCCGAGATTGTGAAACTGTTCTTTACTTTTCAAGACACGCAATCAC 492
Query 373 TAT 375
|||
Sbjct 493 TAT 495
Score = 252 bits (136), Expect = 9e-66
Identities = 146/151 (97%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 45 GATTCAAAGCTTGCTCTTCAAGGGAATTCATCTTCTAATGGTGCAACTATTTCCAGAAGC 104
|||||||||||| | |||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 52 GATTCAAAGCTTACACTTCAAGGGAATTCATCTTCTAATGGTGAAACTATTTACAGAAGC 111
Query 105 AAAAGCTTCGCCTTTAAGGCTCCTCAGGAGAATTTCACCTACCATGATTTCGAGCTCGGC 164
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 112 AAAAGCTTCGCCTTTAAGGCTCCTCAGGAGAATTTCACTTACCATGATTTCGAGCTCGGC 171
Query 165 AAGATCTATGGCGTTGGCTCTTATTCAAAGG 195
|||||||||||||||||||||||||||||||
Sbjct 172 AAGATCTATGGCGTTGGCTCTTATTCAAAGG 202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74045803875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5