BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928759
Length=272
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10575.1 | Symbols: | pseudogene, similar to putative 3-pho... 187 4e-47
AT3G10540.1 | Symbols: | 3-phosphoinositide-dependent protein ... 169 1e-41
AT5G04510.1 | Symbols: PDK1, ATPDK1 | 3'-phosphoinositide-depen... 121 4e-27
> AT3G10575.1 | Symbols: | pseudogene, similar to putative 3-phosphoinositide-dependent
protein kinase-1, similar to 3-phosphoinositide-dependent
protein kinase-1 GB:AAD37165 (Arabidopsis
thaliana); blastp match of 79% identity and 7.5e-31 P-value
to GP|19571127|dbj|BAB86551.1||AP003566 putative 3-phosphoinositide-dependent
protein kinase-1 {Oryza sativa (japonica
cultivar-group)} | chr3:3306508-3307035 FORWARD LENGTH=528
Length=528
Score = 187 bits (101), Expect = 4e-47
Identities = 143/161 (89%), Gaps = 12/161 (7%)
Strand=Plus/Plus
Query 114 GCCTTTAAGATCATGGACAAAAAGTTTATCACCAAGGAGAATAAAACAGCTTATGTCAAA 173
||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 354 GCCTTAAAGATCATGGACAAAAAGTTTATCACCAAAGAGAATAAAACCGCTTATGTCAAA 413
Query 174 TTGGAGAGGATTGTTCTTGATC--C-CG--------G-GATTGTGAAACTCTTCTTTACT 221
|||||||||||||||||||||| | || | |||||||||||| |||||||||
Sbjct 414 TTGGAGAGGATTGTTCTTGATCAACTCGAACATCCCGAGATTGTGAAACTGTTCTTTACT 473
Query 222 TTTCAAGATACACAATCACTATGTAGGTAGTTTCTATTCAA 262
|||||||| || |||||||||||||||||||||||||||||
Sbjct 474 TTTCAAGACACGCAATCACTATGTAGGTAGTTTCTATTCAA 514
> AT3G10540.1 | Symbols: | 3-phosphoinositide-dependent protein
kinase | chr3:3289695-3292702 FORWARD LENGTH=1955
Length=1955
Score = 169 bits (91), Expect = 1e-41
Identities = 101/106 (95%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 17 GGAGATGTTGACTACGGAGAAGGAATTTGATTCAAAGCTTGCTCTTCAAGGGAATTCATC 76
|||||||||||| | ||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 218 GGAGATGTTGACAATGGACAAGGAATTTGATTCAAAGCTTACTCTTCAAGGGAATTCATC 277
Query 77 TTCAAATGGTGAAACTATTTCCAGAAGCAAAAGCCTCGCCTTTAAG 122
|||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 278 TTCAAATGGTGAAACTATTTCCAGAAGCAAAAGCTTCGCCTTTAAG 323
Score = 169 bits (91), Expect = 1e-41
Identities = 127/142 (89%), Gaps = 12/142 (8%)
Strand=Plus/Plus
Query 114 GCCTTTAAGATCATGGACAAAAAGTTTATCACCAAGGAGAATAAAACAGCTTATGTCAAA 173
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 GCCTTGAAGATCATGGACAAAAAGTTTATCACCAAGGAGAATAAAACAGCTTATGTCAAA 494
Query 174 TTGGAGAGGATTGTTCTTGATC--C-CG--------GG-ATTGTGAAACTCTTCTTTACT 221
|||||||||||||||||||||| | || || ||||||||||||||||||||
Sbjct 495 TTGGAGAGGATTGTTCTTGATCAACTCGAACATCCCGGGATTGTGAAACTCTTCTTTACG 554
Query 222 TTTCAAGATACACAATCACTAT 243
||||| ||||||||||||||||
Sbjct 555 TTTCAGGATACACAATCACTAT 576
> AT5G04510.1 | Symbols: PDK1, ATPDK1 | 3'-phosphoinositide-dependent
protein kinase 1 | chr5:1286866-1289908 FORWARD LENGTH=2072
Length=2072
Score = 121 bits (65), Expect = 4e-27
Identities = 76/81 (94%), Gaps = 1/81 (1%)
Strand=Plus/Plus
Query 116 CTTT-AAGATCATGGACAAAAAGTTTATCACCAAGGAGAATAAAACAGCTTATGTCAAAT 174
|||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 581 CTTTAAAGATTATGGACAAAAAGTTTATCACCAAGGAGAATAAAACTGCTTATGTGAAAT 640
Query 175 TGGAGAGGATTGTTCTTGATC 195
|||| ||||||||||||||||
Sbjct 641 TGGAAAGGATTGTTCTTGATC 661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12466401752
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5