BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928760
Length=1307
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47300.1 | Symbols: | F-box and associated interaction doma... 595 3e-169
AT3G10540.1 | Symbols: | 3-phosphoinositide-dependent protein ... 128 1e-28
> AT5G47300.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:19198125-19199375 FORWARD LENGTH=1251
Length=1251
Score = 595 bits (322), Expect = 3e-169
Identities = 758/957 (79%), Gaps = 76/957 (8%)
Strand=Plus/Plus
Query 353 ATCTGTAGAGATCACAGGTGCAA-TTAGCCTAATCGACTCTCGTTATAGTTTTGAATATC 411
|||||||||| |||| ||| || ||||||||||||||||| || |||||||||| ||
Sbjct 345 ATCTGTAGAGGCCACATGTG-AACTTAGCCTAATCGACTCTTTTTCTAGTTTTGAAGATA 403
Query 412 AATTCGATATTGATAAAGTCTTTCACTGTGATGGCTTATTACTATGCACCAACGTATACC 471
||||||| ||| | |||||||||||||||| |||||||| |||||||| ||| | ||
Sbjct 404 AATTCGAGATTTCTCAAGTCTTTCACTGTGACGGCTTATTGTTATGCACCGACGCAGACA 463
Query 472 ACACTAGAATCGTGGTTTGGAACCCGTGCACTGGTCAAACCAGATGTATTCAACCCA-TA 530
|||||||||||||||||||||||||||| |||||| |||| || || ||| |||||| ||
Sbjct 464 ACACTAGAATCGTGGTTTGGAACCCGTGTACTGGTAAAACTAGGTGGATTGAACCCAATA 523
Query 531 GAT-GATTGCGACTACTGTGCTCTTGGATCCTACCAAGACCACAAATCCCACGGTAATAG 589
|| | |||| |||||| |||| ||||||||||| ||| | || ||| ||||||||||
Sbjct 524 -ATCG-TTGCTACTACTATGCTTTTGGATCCTACTTGGAC-A-AA-TCCTACGGTAATAG 578
Query 590 CTACAAAATATTGAGCTGTAACAATGGGTCTTTAACTAAAGGCTACGCCAGCCAAGAATT 649
||||||||||||||||| || ||| | | | | ||||||| | ||||||| |
Sbjct 579 CTACAAAATATTGAGCTATAG---TGG-T-T--A--T---GGCTACGAGAACCAAGAACT 626
Query 650 TGCAATCCATGAGATTAACTCTAATGACTCTAATTCATGGAGGATTATTGATG-CAACTC 708
|||||| |||||||||||||| | ||| |||||||| || |||||| || |||
Sbjct 627 CGCAATCTATGAGATTAACTCT-----C---AAT-CATGGAGGTTTCTTGATGTCA-CTC 676
Query 709 GTAAGTGC--CA-CGTAA-ACCATACTGATTACGGCGTGTCTTTGAAAGGAAACACTTAT 764
|| | ||| | || || | ||||||||||||| ||||||||||| ||| | |||||
Sbjct 677 GTGACTGCATCCTCGAAAGAT-ATACTGATTACGGTGTGTCTTTGAAGGGACATACTTAC 735
Query 765 TGGTTTGCTTCAGATGAAGAACA-AGAACAG-CTTGGCGTATTTTTACTCAGTTTTGATT 822
|||||||| |||||||| ||| | |||| | || |||||||| || ||||||||||||
Sbjct 736 TGGTTTGCGTCAGATGA-GAA-AGAGAAAAATCTCAGCGTATTTCTAGTCAGTTTTGATT 793
Query 823 ATACAACCGAAAGATTTAGACGTCAATGTCTTCCGTATCAGTGTCCT-ATTTTCGAA-AC 880
||||||| |||||||||||||||| | |||| ||||||||||| ||| ||| | || ||
Sbjct 794 ATACAACTGAAAGATTTAGACGTCTACGTCTCCCGTATCAGTGCCCTGATTAT--AACAC 851
Query 881 TGTGTCTCTATCAGTTATTAGAGACGAGAAGCTTTCGGTGTTGTTGCAACGCGAAAGTAG 940
|| |||| |||| ||| ||||||| ||||| ||| |||||||||| |||||||||| ||
Sbjct 852 TGCGTCTTTATCCGTTGTTAGAGAAGAGAAACTTGCGGTGTTGTTACAACGCGAAAATAC 911
Query 941 ATCAAACATAGAGATATGGCTGACAAATAAGATTGGTGAGACCAAAGTGGTATCGTGGAG 1000
||||| | |||||||||| |||||| || ||||||||||||||||||||| ||||||||
Sbjct 912 ATCAAGGACAGAGATATGGGTGACAAGTAGGATTGGTGAGACCAAAGTGGTGTCGTGGAG 971
Query 1001 CATGCTCTTACTCTTTACACTAGATGTCCCCTCCGAATT-TT-ATATATGGAATGGAATA 1058
|||| ||||| | | | ||| |||| |||||| | || || | || ||| |||
Sbjct 972 CATGGTCTTAG-C---AG--TGGATTTCCCGTCCGAACTATTCATTT-TGTC-TGGCATA 1023
Query 1059 AGTTTCTTGGTCGATGAGGAGAAGAAAGTCATCGTGTGTTGTGACAAATT-CAT-GGT-A 1115
|||||||||||||||| |||||| ||| || |||| |||||||| || || | | || |
Sbjct 1024 AGTTTCTTGGTCGATGCGGAGAAAAAATTCGTCGTATGTTGTGATAA-TTACTTCGGAGA 1082
Query 1116 --ACTGAATTA-GACGGCAAAAACTTGGT-CTACATTATTGGAGAGGACAATAAAGTCAC 1171
| ||||| | || |||||||||||| | ||||| |||||||| |||| ||||| |
Sbjct 1083 GGA-TGAAT-ACGATACCAAAAACTTGGTTC-ACATTGTTGGAGAGAACAACAAAGTGAG 1139
Query 1172 ACAAGTTGATTTTGGATTAGTC-GAATG-T-T-GGCCATTTTTGTTTAACTATGTTCCAA 1227
| ||||| |||| ||| || || |||| | | |||||||||||||||| ||||||||||
Sbjct 1140 AGAAGTTAATTTCGGAGTA-TCCGAATCATCTTGGCCATTTTTGTTTAATTATGTTCCAA 1198
Query 1228 GTATGACTCAAATCCACCAAGGTCTACTAGGAGGCAAAAGAAAAAGAGAT-GAATAA 1283
|| ||| ||||||| ||||| || |||||||||||||| |||| | ||||||
Sbjct 1199 GTTTGATTCAAATCTGGGAAGGTGTA---GGAGGCAAAAGAAAGAGAG-TCGAATAA 1251
> AT3G10540.1 | Symbols: | 3-phosphoinositide-dependent protein
kinase | chr3:3289695-3292702 FORWARD LENGTH=1955
Length=1955
Score = 128 bits (69), Expect = 1e-28
Identities = 77/81 (95%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 73 AAGGTCGGTTCTACAGTGCACAAGTTGTGGACGCTCTTGAGTATATACATAATATGGGAC 132
||| |||||||||||||||| ||||||| || ||||||||||||||||||||||||||||
Sbjct 652 AAGCTCGGTTCTACAGTGCAGAAGTTGTTGATGCTCTTGAGTATATACATAATATGGGAC 711
Query 133 TGATACATCGAGATATTAAGC 153
|||||||||||||||||||||
Sbjct 712 TGATACATCGAGATATTAAGC 732
Score = 99.0 bits (53), Expect = 1e-19
Identities = 72/80 (90%), Gaps = 5/80 (6%)
Strand=Plus/Plus
Query 237 GATGATAAGGCGTGCACTTTTGTCGGGACGGCGGCATATTTTCCTC--G---TTCTAAAC 291
|||||||||||||||||||||||||||||||| |||||| |||||| | ||||||||
Sbjct 840 GATGATAAGGCGTGCACTTTTGTCGGGACGGCTGCATATGTTCCTCCTGAAGTTCTAAAC 899
Query 292 TCCTCTCCAGCAACTTTCGG 311
|||||||||||||| |||||
Sbjct 900 TCCTCTCCAGCAACGTTCGG 919
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64306898145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5