BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928779

Length=1142
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G30825.1 | Symbols: ARPC2A, DIS2 | Arp2/3 complex, 34 kD sub...   215    8e-55


> AT1G30825.1 | Symbols: ARPC2A, DIS2 | Arp2/3 complex, 34 kD subunit 
p34-Arc | chr1:10960941-10963182 FORWARD LENGTH=1305
Length=1305

 Score =  215 bits (116),  Expect = 8e-55
 Identities = 133/141 (94%), Gaps = 2/141 (1%)
 Strand=Plus/Plus

Query  904   TGGATTGCATTTGATGATGTTTGTTACCATGTTCAGGTGACAGTGAAGAATCCAAACCTC  963
             ||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||| || 
Sbjct  259   TGGATTGAATTTGATGATGTTCGTTACCATGTTCAGGTGACAATGAAGAATCCAAATCTG  318

Query  964   TTGTTGCTTGT-GGTTTCGTTACCAAATCCACCACCTGAAGCAATGTCCTTTGATGGACT  1022
             ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  319   TTGTTGCTT-TCGGTTTCGTTACCAAATCCACCACCTGAAGCAATGTCCTTTGATGGACT  377

Query  1023  TCCATTAGGAGCTATAGAAGC  1043
             ||| |||||||||||||||||
Sbjct  378   TCCTTTAGGAGCTATAGAAGC  398



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 56023808220


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5