BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928781
Length=1048
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10760.1 | Symbols: | Homeodomain-like superfamily protein ... 1580 0.0
> AT3G10760.1 | Symbols: | Homeodomain-like superfamily protein
| chr3:3369580-3371227 FORWARD LENGTH=1570
Length=1570
Score = 1580 bits (855), Expect = 0.0
Identities = 1001/1066 (94%), Gaps = 31/1066 (3%)
Strand=Plus/Plus
Query 1 CCTCCTCTGtttttttGAAGAT---AATGAGAGAAGACGATTCAGACTGGTTCGCAAGAT 57
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 209 CCTCCTCTGTTTTTTCAAAGATAAAAATGAGAGAAGACGATTCAGACTGGTTCGCAAGAT 268
Query 58 GGGAAGAAGAACTTCCATCACCAGAAGAGCTCATGCCAATTTCTCAATCTCTAATCTCAC 117
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 269 GGGAAGAAGAACTTCCATCACCAGAAGAGCTCATGCCAATATCACAATCTCTAATCTCAC 328
Query 118 CCGATCTAGCTCTAGCCTTCGATATACGAAGCCCAAATCACGGAAACGGAAACTCAAACC 177
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 329 CCGATCTAGCTCTAGCCTTCGATATACGAACCCCAAATCACGGAAACGGAAACTCAAACC 388
Query 178 -A----A-C--C-TCATCATCACCAAACCACACCTCCTACACCATCTCAGCTTCAGCTTC 228
| | | | |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 389 AACCTCATCATCATCATCATCACCAAACCACACCTCCTACACCGTCTCAGCTTCAGCTTC 448
Query 229 CATCTTCACAAGCCAATTCCTCAGCCGAATTCGCTGCAGATTCAGCAGATCTAGGCT-C- 286
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 449 CATCTTCTCAAGCCAATTCCTCAGCCGAATTCGCTGCAGATTCAGCAGATCTAGGCTCCG 508
Query 287 -AGGAGCTGCCGGAGACGAACCAGCACGAACCTTAAAACGACCGCGTCTTGTCTGGACAC 345
|||||||||||||||||||||||| || || ||||||||||| ||||||||||||||||
Sbjct 509 GAGGAGCTGCCGGAGACGAACCAGCTCGGACTTTAAAACGACCTCGTCTTGTCTGGACAC 568
Query 346 CGCAGCTTCATAAACGTTTCGTTGATGCTGTTGCGCATTTAGGGATTAAGAACGCGGTTC 405
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 569 CGCAGCTGCATAAACGTTTCGTTGATGCTGTTGCGCATTTAGGGATTAAGAACGCAGTTC 628
Query 406 CTAAAACGATTATGCAGCTTATGAGTGTTGATGGTTTAACTAGAGAAAACGTTGCGAGTC 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 CTAAAACGATTATGCAGCTTATGAGTGTTGATGGTTTAACTAGAGAAAACGTTGCGAGTC 688
Query 466 ATTTGCAAAAGTATAGACTTTATCTTAAGAGAATGCAAGGTTTGTCTTCTGGTGGTGGTG 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 ATTTGCAAAAGTATAGACTTTATCTTAAGAGAATGCAAGGTTTGTCTTCTGGTGGTGGTG 748
Query 526 CTGGTTCAGATCCGGCTACTGATCGTCTTTTCGCTAGCTCTCCGGTTCCTGCTCATTTTC 585
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 749 CTGGTTCAGATCCAGCTACTGATCGTCTTTTCGCTAGCTCTCCTGTTCCTGCTCACTTTC 808
Query 586 TTCATCCTAATCGTGTTCCCAGTTCTGATCATTTCATGCCGTCTTTTGTTCCCATTGCTA 645
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 809 TTCATCCTAATCGTGTTCCCAGTTCTGATCATTTCATGCCGTCTTTTGTTCCTATTGCTA 868
Query 646 CTCTTCAACAACAACAACAAATGGCTGCTGCGGCTGCCGTGGCTGCAGCAGCAGCTAATC 705
||||||||||||||||||||||||||||||| || |||| |||| |||||||||||||
Sbjct 869 CTCTTCAACAACAACAACAAATGGCTGCTGCTGCGGCCG---CTGCTGCAGCAGCTAATC 925
Query 706 CTCATTTACAACCGCCTCAGTTCCACCGACAAATCGCAGCTGCGCATTTTGGTTCACCGA 765
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 926 CTCATTTACAACCGCCTCAGTTCCACCGTCAAATCGCAGCTGCGCATTTTGGTTCACCGA 985
Query 766 CAAACGGTGGATTCAGTTCACCGACGA--A-TGGTCAATTTGGATCACCGACTAGTAATG 822
| || |||||||||||||||||||||| | ||| || ||||||||||||||||||||||
Sbjct 986 CTAATGGTGGATTCAGTTCACCGACGAGTAATGGACAGTTTGGATCACCGACTAGTAATG 1045
Query 823 GGTTTGGATCACCGACGGCGAATGGGAAGTTTGATCCTTCGTTCTTGGCGGTGAGGCAAA 882
| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 GATTTGGATCACCGACGACTAATGGGAAGTTTGATCCTTCGTTCTTGGCGGTGAGGCAAA 1105
Query 883 CGCCGCAGCAGCAGCAGCAACCAATTCACAGAATGTCTACACCATCATTGCATAGTCCAG 942
||| ||||||| | | | |||||| |||||||||||||||||||||||||||||||
Sbjct 1106 CGC---AGCAGCA--A-C--C-AATTCAGAGAATGTCTACACCATCATTGCATAGTCCAG 1156
Query 943 TTGGTAATTACGTTGAGGATTTGGAATCTGCAAACGCTAATGGAGGGAGAACTGTCTTAA 1002
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 TTAGTAATTACGTTGAGGATTTGGAATCTGCAAACGCTAATGGAGGGAGAACTGTCTTAA 1216
Query 1003 CTTTATTCCCAACTCGAGACGATTGAAA-GTCAAAATCTTTCTGGT 1047
|||||||||||||||||||||||| ||| |||| ||||||| |||
Sbjct 1217 CTTTATTCCCAACTCGAGACGATTAAAAAGTCATTATCTTTCCGGT 1262
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51389532381
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5