BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928783
Length=1043
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10770.1 | Symbols: | Single-stranded nucleic acid binding ... 1716 0.0
AT5G05100.1 | Symbols: | Single-stranded nucleic acid binding ... 494 9e-139
> AT3G10770.1 | Symbols: | Single-stranded nucleic acid binding
R3H protein | chr3:3372264-3374271 REVERSE LENGTH=1444
Length=1444
Score = 1716 bits (929), Expect = 0.0
Identities = 1007/1045 (96%), Gaps = 3/1045 (0%)
Strand=Plus/Plus
Query 1 TACGAAGCTTTTTCTTCATC--TATGGCTGCTATGACCGAGAAGGAAGCTATGGTGGATC 58
||||| || ||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 224 TACGAGGC-TTTTCTTCATCTTTATGGCTTCTATGACCGAGAAGGAAGCTATGGTGGATC 282
Query 59 CTTTTCTGGTCGAAGCTCTTCAGAATCCTCGTCATCGTCTCACCATTTTGCGGATGGAGC 118
||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 283 CTTTTCTGGTCGAGGCTCTTCAAAATCCTCGTCATCGTCTCACCATTTTGCGAATGGAGC 342
Query 119 TTGATATACAGAAGTTCTTTCAAAACCCTGAGCAGCTTCAGTTCGAATTCCGGCCTTTTC 178
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 343 TTGATATACAGAAGTTCTTTCAAAACCCTGAGCAGCTTCAGTTCGAATTCCCGCCTTTTC 402
Query 179 CAACATCGTACCTGCGTCTTGCTGCACATCGAGTTGCTCAGCATTATGGACTAGTAACCA 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 CAACATCGTACCTGCGTCTTGCTGCACATCGAGTTGCTCAGCATTATGGACTAGTAACCA 462
Query 239 TGGCTTTGGACAATGGTACTGGTGCAGGTGATGGATCCGAGAACAGAATCCTGGTGACTA 298
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |
Sbjct 463 TGGCTTTGGACAATGGTACTGGTGCAGGAGATGGATCCGATAACAGAATCCTCGTGACGA 522
Query 299 AGACAGCGGAGAGTAGATTTCCTTATGTCTGCTTATCCGAAATCCCTGTGAAACAACCTG 358
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 AGACAGCGGAAAGTAGATTTCCTTATGTCTGCTTATCCGAAATCCCTGTGAAACAACCTG 582
Query 359 AGAATGGTAGACCCGAGGGTTTCAAAATCGCTATCAAGCCTAGACCCAAGAGAGGATCTG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 AGAATGGTAGACCCGAGGGTTTCAAAATCGCTATCAAGCCTAGACCCAAGAGAGGATCTG 642
Query 419 GTTGTGGGGGTAGCGGATCGGGAGTACAACAGAATCTTTTGAGAAGTGTTGAGGAGAGAA 478
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 643 GTTGTGGGGGTAGCGGATCAGGAGTACAGCAGAATCTTTTGAGAAGTGTTGAGGAGAGAA 702
Query 479 AGGAAGAGTATGATAAAGCCCGGGCTCGGATCTTTAACAGCCCTAGCAGTTCCGACTCTG 538
||||||||||||||||||| || |||||||||||||| || |||||||||||||||||||
Sbjct 703 AGGAAGAGTATGATAAAGCTCGCGCTCGGATCTTTAATAGTCCTAGCAGTTCCGACTCTG 762
Query 539 AAGATTCTTCATCACTACGACCTCCCCCTCTTGAAGTGAAAAACACATGTATAAACCGGA 598
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 763 AAGATTCTTCATCACTACGACCTCCCTCTCTTGAAGTGAGAAACACATGTATAAACCGGA 822
Query 599 ATGAGACTGAAGTGGCGGTTAATAATAATCCTGTTGATGCTGTTACTCGAGACTCTGGAC 658
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 823 ATGAGACTGAAGTGGCGGTTAATAATAGTCCTGTCGATGCTGTTACTCGAGACTCTGGAC 882
Query 659 GGACTTCTCGAGTAGCCATTATCAGAGATAGAGAGAAAGATCGATATGACCCGGATTATG 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 GGACTTCTCGAGTAGCCATTATCAGAGATAGAGAGAAAGATCGATATGACCCGGATTATG 942
Query 719 ACAGGAGCTATGACAGGTATGTCGTAGATCCCGCCTACAGGTACGTCAGGGTTATGCCGT 778
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 943 ACAGGAGCTATGACAGGTATGTCGTGGATCCGGCCTACAGGTACGTTAGGGTTATGCCGT 1002
Query 779 CTGGCCAAAGCTTCAGTCCAATACCAATCCACATTCCGTTTCACGATGGGGTTTTCCCGC 838
|||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||
Sbjct 1003 CTGGCCAAAGCTTCAGTCCAATGCCAATCCATATTCCGTTTCACGATGGGTTTTTCCCGC 1062
Query 839 AGATGCCAAGAGGTCATCAAGCCAACCTAAACTATGGGCATCCGCTTAACCCTGCTTTGA 898
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 ATATGCCAAGAGGTCATCAAGCCAACCTAAACTATGGGCATCCGCTTAACCCTGCTTTGA 1122
Query 899 GTCCCTTTACTCATAACGCGGCTTCATATACACCGTGGCCAAACTCACCTGCTATGAACT 958
|||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||
Sbjct 1123 GTCCCTTTACTCATAACGTGGCTTCATATACACCGTGGCCAAACTCACCCGTTATGAACT 1182
Query 959 ATGCACAGCCGTTGAACGGCTCAGACACAAATCTTTTCAGGCATCCTTCTGCAAGTAATC 1018
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1183 ATGCACAGCCGTTGAACGGCTCAGACACAAATCTTTACAGGTATCCTTCTGCAAGTAATC 1242
Query 1019 CCTGACCGCAAGACTAGTGTTTGAG 1043
|||||| |||||| |||||||||||
Sbjct 1243 CCTGACAGCAAGAGTAGTGTTTGAG 1267
> AT5G05100.1 | Symbols: | Single-stranded nucleic acid binding
R3H protein | chr5:1505122-1507224 REVERSE LENGTH=1598
Length=1598
Score = 494 bits (267), Expect = 9e-139
Identities = 467/561 (83%), Gaps = 24/561 (4%)
Strand=Plus/Plus
Query 17 CATCTATGGCTGCTATGACCGAGAAGGAAGCTATGGTGGATCCTTTTCTGGTCGAAGCTC 76
|||| ||||| ||||||| ||| |||||||||||||||||||||||| ||||||| ||||
Sbjct 280 CATCGATGGCCGCTATGAGCGACAAGGAAGCTATGGTGGATCCTTTTTTGGTCGAGGCTC 339
Query 77 TTCAGAATCCTCGTCATCGTCTCACCATTTTGCGGATGGAGCTTGATATACAGAAGTTCT 136
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 340 TTCAGAACCCTCGTCATCGTCTCACCATTTTGCGTATGGAGCTTGATATACAGAAGTTCT 399
Query 137 TTCAAAACCCTGAGCAGCTTCAGT-TCGAATTCCGGCCTTTTCCAACATCGTACCTGCGT 195
|||||| || ||||||| || | | || |||| |||||| || ||||| || || |||
Sbjct 400 TTCAAAGTCCAGAGCAGCAACAATAT-GAGTTCCAGCCTTTGCCTACATCTTATCTTCGT 458
Query 196 CTTGCTGCACATCGAGTTGCTCAGCATTATGGACTAGTAACCA-TGGCTTTGGACAATGG 254
||| ||| || || |||||||||||||| || ||| | |||| || |||| || | ||
Sbjct 459 CTTATTGCTCACCGTGTTGCTCAGCATTACGGGCTATTTACCACTG-CTTTAGA-A--GG 514
Query 255 TACTGGTGCAGGTGATGGATCCGAGAACAGAATCCTGGTGACTAAGACAGCGGAGAGTAG 314
| ||||| |||||| || | |||||||||||||| ||| || || | || |||||
Sbjct 515 TGGTGGTGT---TGATGGCTCAGGGAACAGAATCCTGGCGACCAAAACGGTTGAAAGTAG 571
Query 315 ATTTCCTTATGTCTGCTTATCCGAAATCCCTGTGAAA-CAACCTGAGA---ATGGTAGAC 370
|| ||||| ||||| || || || || ||||| ||| |||||||||| ||||||| |
Sbjct 572 ATACCCTTACGTCTGTTTGTCTGAGATTCCTGT-AAAGCAACCTGAGATTCATGGTAGGC 630
Query 371 CCGAGGGTTTCAAAATCGCTATCAAGCCTAGACCCAAGAGAGGATCTGGTTGTGG-G-GG 428
| ||||||||||||||||| ||||||||||| || || |||||| ||||| | || | ||
Sbjct 631 CTGAGGGTTTCAAAATCGCCATCAAGCCTAGGCCTAACAGAGGAGCTGGT-G-GGAGTGG 688
Query 429 TAGCGGATCGGGAGTACA-ACAGAATCTTTTGAGAAGTGTTGAGGAGAGAAAGGAAGAGT 487
||| ||||| |||||| | | |||||||||||||||| |||||||||||||| |||||||
Sbjct 689 TAGTGGATCAGGAGTAGAGA-AGAATCTTTTGAGAAGCGTTGAGGAGAGAAAAGAAGAGT 747
Query 488 ATGATAAAGCCCGGGCTCGGATCTTTAACAGCCCTAGCAGTTCCGACTCTGAAGATTCTT 547
|||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 748 ATGATAAAGCTCGGGCTCGTATCTTCAACAGCCCTAGCAGTTCAGACTCTGAAGATTCTT 807
Query 548 CATCACTACGACCTCCCCCTC 568
|| || |||| |||| ||||
Sbjct 808 CA--AC-ACGAGCTCCTCCTC 825
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51138361646
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5