BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928790
Length=824
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10820.2 | Symbols: | Transcription elongation factor (TFII... 588 3e-167
> AT3G10820.2 | Symbols: | Transcription elongation factor (TFIIS)
family protein | chr3:3387200-3391003 FORWARD LENGTH=2211
Length=2211
Score = 588 bits (318), Expect = 3e-167
Identities = 634/776 (82%), Gaps = 63/776 (8%)
Strand=Plus/Plus
Query 1 TTTT-GACTAGTACTTGTGCAGATGGATAAAGCAGAAATGGTGGATGAGATGATGATTTT 59
|||| |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1478 TTTTGGACTCGTACTTGTGCAGATAGATAAAGCAGAGATGGTGGATGAGATGATGATTTT 1537
Query 60 CAAGAAGATGAGTGTCCTTCCCACTGAAAAGGATTTTCTTGATGCCATCGTTTCGGTTTC 119
|||||||||||||||||||| ||||||||||||||| ||||||||||||| || |||||
Sbjct 1538 CAAGAAGATGAGTGTCCTTCTAACTGAAAAGGATTTTGTTGATGCCATCGTATCTGTTTC 1597
Query 120 TCTCCAGGAGCTCAAGAGATCA-TC--CCTCA-----G-GGCCATGGCGTGCCCTAAGTT 170
|||| |||| || | ||||||| || ||| | ||||| ||| |||||||||||
Sbjct 1598 TCTCAAGGACCTTACGAGATCACTCTTTGTCAGGTTCGAGGCCAAGGCTTGCCCTAAGTT 1657
Query 171 TGACCCTATCCATATGGCTTACAG-GGAGACGGTTAGGTTCGTAGGGACTACCTTTTCTG 229
||||| |||||||| | ||| | | ||||||||||||| |||||||| ||| ||| ||
Sbjct 1658 TGACCTTATCCATAAGACTT-CCGTCGAGACGGTTAGGTGCGTAGGGAAAACC-TTTATG 1715
Query 230 C-TATGGTCTCTAAGG-TTCTTAAAGAGTTTCGC-CCCCTCGAT-GAAACTCATCCCGTG 285
| |||| ||||||||| ||| || |||||||| | |||| | || | ||||||||||| |
Sbjct 1716 CATATGCTCTCTAAGGTTTC-TAGAGAGTTTC-CTCCCCGCAATCG-AACTCATCCCG-G 1771
Query 286 TTCGGTCGCCTCCTCTCTCAGCGATTTGATGTTAGTCACTTGACCCTTGCCGTTG-C-AC 343
| | ||||||||| ||||||||||||| || ||||||| | |||| | | | | ||
Sbjct 1772 -T--G--GCCTCCTCTATCAGCGATTTGATCCTACTCACTTGTCTCTTG-C-TCGCCAAC 1824
Query 344 AA-CTGGTAAATGCAAAGAGACTGTTTTACAGTATCAGCATGAGGTTTGTGCAGCTAATG 402
|| || || |||||| || |||| | | ||| | | | | | | | |
Sbjct 1825 AAGTTGCTATATGCAAGGAAACTG------A-T-TCA-C---A-G--TAT-C--C----G 1862
Query 403 AACAAGGATGATTGTGATTCACTGGACAAGTGCAAGCGCCTGAATGTGGCTGCTCTCGGT 462
| | || ||||||||||||||||||||||||||||||||||| |||| |||||| |||
Sbjct 1863 --C-ATGA-GATTGTGATTCACTGGACAAGTGCAAGCGCCTGAAAGTGGATGCTCTTGGT 1918
Query 463 TGCTTGCTTACTGTTGCTATGAGAATCCTCCCTT-GTTTGGCTTATCTCGAAAAGGTCAG 521
| | || ||||| |||| |||||| | | ||| | |||||||||||||||||||| ||||
Sbjct 1919 TACATGTTTACTATTGCAATGAGA-TGCGCCCCTAGTTTGGCTTATCTCGAAAAGTTCAG 1977
Query 522 GCAGTACATGGCTCAGGCGACTGAGAAGAATCTGGAAGATGAGAATGCTGCTACTCTGAC 581
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1978 GCAGTACATGGCTCAGGCGAATGAGAAGAATCTGGAAGATGAGACTGCTGCTACTCTGAC 2037
Query 582 AAACAAGAAGCATGTCGCCCTCTTGTCTAAGGAAGCCTGCACTGGCCTTCACACCCCTCG 641
|||||||||||||||||||||||| || |||||| |||||| | |||| |||||||||
Sbjct 2038 GAACAAGAAGCATGTCGCCCTCTTGGCTGAGGAAGACTGCACAGTCCTTTGCACCCCTCG 2097
Query 642 CTTTGA-TATTCAAAATGTTGCCGGCTTTGTTCTTCCAGAAGCTGTTGC-TCGGGTCGAA 699
|||||| | ||||||||||||||| |||||||||||||||| || |||| | || | ||
Sbjct 2098 CTTTGAGT-TTCAAAATGTTGCCGACTTTGTTCTTCCAGAAACT-TTGCGTTGGCTTGAC 2155
Query 700 GAGTTGGGGCTTGAATATGGCTTAAAGCTCCAAGATAATCAACTGGACTCTGCAAA 755
||||||| |||| || |||| |||||||||| |||||||||||||||||||||
Sbjct 2156 GAGTTGGAGCTTCAAGCCAGCTTCAAGCTCCAAGCTAATCAACTGGACTCTGCAAA 2211
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40137083453
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5