BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928792
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10850.1 | Symbols: GLX2-2, GLY2 | Metallo-hydrolase/oxidore... 1236 0.0
> AT3G10850.1 | Symbols: GLX2-2, GLY2 | Metallo-hydrolase/oxidoreductase
superfamily protein | chr3:3397549-3399574 REVERSE
LENGTH=1036
Length=1036
Score = 1236 bits (669), Expect = 0.0
Identities = 771/820 (94%), Gaps = 8/820 (1%)
Strand=Plus/Plus
Query 1 CGATCGATCGAAGGAGACGGCGATGAAGATCTTCCACGTTCCTTGTCTACAAGACAACTA 60
||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 34 CGATCGATCTAAGGAGA---CGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTA 90
Query 61 CTCTTATCTGATAATCGATGAGAGCACGGGAGACGCGGCGGTTGTGGATCCAGTTGATCC 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 91 CTCTTATCTGATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCC 150
Query 121 GGAGAAGGTGATCGCATCGGCTGAGCAGCACCAAGCTAAGATCAAGTTCGTACTCACCAC 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 151 GGAGAAGGTGATCGCATCGGCTGAGAAGCACCAAGCTAAGATCAAGTTCGTACTCACTAC 210
Query 181 GCATCATCACTGGGATCATGCCGGTGGAAACGAGAAGATTAAGCAGTTGGTTCCTGAAAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 211 GCATCATCACTGGGATCATGCCGGTGGAAACGAGAAGATTAAGCAGTTGGTTCCTGATAT 270
Query 241 CAAAGTATATGGAGGTTCTCTGGATAAGGTGAAAGGGT-GCACTGATGCTGTTGATAATG 299
||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||
Sbjct 271 CAAAGTATATGGAGGTTCTCTGGATAAGGTGAA-GGGTTGCACTGATGCGGTTGATAATG 329
Query 300 GTGACAAGTTGTCTTTGGGTCAGGATGTCAACATATTGGCTCTCCACACCCCTTGTCACA 359
|||||||| || |||||||||||||| | |||||||||||||||||||| ||||||||||
Sbjct 330 GTGACAAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTGTCACA 389
Query 360 CCAAGGGTCACATTAGTTATTATGTTACCGGAAAAGAAGGAGAAAACCCAGCTGTGTTCA 419
||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||
Sbjct 390 CCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAACCCAGCCGTGTTCA 449
Query 420 CTGGAGATACCCTTTTTGTTGCTGGATGCGGGAAATTTTTCGAAGGGACAGCTGAACAGA 479
| |||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| ||||
Sbjct 450 CCGGAGATACACTTTTTGTTGCTGGATGTGGGAAGTTTTTTGAAGGGACAGCTGAGCAGA 509
Query 480 TGCATAAGTCATTGTGTGTGACTCTTGCTTCATTACCTAAACCAACACAGGTTTACTGCG 539
|| || |||| |||||||||||||| ||| ||||||||||||| ||||||||||||||||
Sbjct 510 TGTATCAGTCGTTGTGTGTGACTCTGGCTGCATTACCTAAACCGACACAGGTTTACTGCG 569
Query 540 GCCACGAGTACACGGTGAAAAACTTGGAATTTGCTTTAACTGTGGAACCAAACAACGAGA 599
|||| |||||||| || || ||||||||||||||| ||||||||||||||||||||| ||
Sbjct 570 GCCATGAGTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGGA 629
Query 600 AGATACAGCAGAAGTTAGCATGGGCCCGTCAACAGCGCCAAGCAGATCTTCCGACAATCC 659
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 630 AGATACAACAGAAGTTAGCATGGGCCCGTCAACAGCGCCAAGCAGATCTTCCCACAATCC 689
Query 660 CTTCAACACTAGAAGAAGAGCTCGAAACAAACCCATTTATGCGCGTTGATAAGCCAGAGA 719
|||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 690 CTTCAACACTGGAGGAAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGA 749
Query 720 TACAGGAGAAACTCGGTTGCAAGTCGCCAATTGATACACTGAGGGAAGTTCGGAACAAGA 779
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 750 TACAGGAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAACAAGA 809
Query 780 AGGATCAGTGGAGGGGATGAT-A-AA-TGGAGAACTTCTT 816
||||||||||||||||||||| | || |||||| ||||||
Sbjct 810 AGGATCAGTGGAGGGGATGATGATAAATGGAGAGCTTCTT 849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39885912718
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5