BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg928793 Length=259 Score E Sequences producing significant alignments: (Bits) Value AT3G10860.1 | Symbols: | Cytochrome b-c1 complex, subunit 8 pr... 424 3e-118 AT5G05370.1 | Symbols: | Cytochrome b-c1 complex, subunit 8 pr... 263 6e-70 > AT3G10860.1 | Symbols: | Cytochrome b-c1 complex, subunit 8 protein | chr3:3399736-3400741 FORWARD LENGTH=525 Length=525 Score = 424 bits (229), Expect = 3e-118 Identities = 250/260 (96%), Gaps = 1/260 (0%) Strand=Plus/Plus Query 1 ATCTGAGAAGAGAAGAAG-AAATGGGGAAGCAGCCGGTGAAATTGAAGGCGGTGGTTTAC 59 ||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 59 ATCTGGGAAGAGAAAAAGAAAATGGGGAAGCAGCCGGTGAAATTGAAGGCGGTGGTTTAC 118 Query 60 GCACTTTCGCCGTTCCAGCAGAAGATCATGACCGGTCTCTGGAAGGATCTGCCGGAGAAG 119 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 GCACTTTCTCCGTTTCAGCAGAAGATCATGACCGGTCTCTGGAAGGATCTGCCGGAGAAG 178 Query 120 ATCCATCACAAGGTCTCCGAGAATTGGATCAGCGCCACTCTTCTCGTTACCCCTGTCGTT 179 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 179 ATCCACCACAAGGTCTCTGAGAATTGGATCAGCGCCACTCTTCTCGTTACCCCTGTCGTT 238 Query 180 GCAACCTACTGGTATGCTCAATACTTCAAGGAACAGGAGAAGCTTGAGCACAGATTCTGA 239 | |||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 239 GGAACCTACTGGTATGCTCAGTATTTCAAGGAACAGGAGAAGCTTGAGCACAGATTCTGA 298 Query 240 AGCATGAAGTCACTCCTTTT 259 |||||||||||||||||||| Sbjct 299 AGCATGAAGTCACTCCTTTT 318 > AT5G05370.1 | Symbols: | Cytochrome b-c1 complex, subunit 8 protein | chr5:1590797-1591903 REVERSE LENGTH=433 Length=433 Score = 263 bits (142), Expect = 6e-70 Identities = 200/228 (88%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 19 AAATGGGGAAGCAGCCGGTGAAATTGAAGGCGGTGGTTTACGCACTT-TCGCCGTTCCAG 77 ||||||| ||||||||||||||||||||||||||||||||||| || |||||||| ||| Sbjct 33 AAATGGGAAAGCAGCCGGTGAAATTGAAGGCGGTGGTTTACGCG-TTATCGCCGTTTCAG 91 Query 78 CAGAAGATCATGACCGGTCTCTGGAAGGATCTGCCGGAGAAGATCCATCACAAGGTCTCC 137 |||||||||||||| ||||| ||||||||||| ||||||||||| || ||||||||||| Sbjct 92 CAGAAGATCATGACGGGTCTTTGGAAGGATCTTCCGGAGAAGATTCACCACAAGGTCTCA 151 Query 138 GAGAATTGGATCAGCGCCACTCTTCTCGTTACCCCTGTCGTTGCAACCTACTGGTATGCT 197 |||||||||||||| | | ||| ||||| | |||||||| | |||||||| ||||||| Sbjct 152 GAGAATTGGATCAGTACTATTCTCCTCGTCGCTCCTGTCGTCGGAACCTACTCGTATGCT 211 Query 198 CAATACTTCAAGGAACAGGAGAAGCTTGAGCACAGATTCTGAAGCATG 245 || |||||||| ||||| |||||||| |||||||| |||| ||||||| Sbjct 212 CAGTACTTCAAAGAACAAGAGAAGCTGGAGCACAGGTTCT-AAGCATG 258 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11812921015 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5