BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928793
Length=259
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10860.1 | Symbols: | Cytochrome b-c1 complex, subunit 8 pr... 424 3e-118
AT5G05370.1 | Symbols: | Cytochrome b-c1 complex, subunit 8 pr... 263 6e-70
> AT3G10860.1 | Symbols: | Cytochrome b-c1 complex, subunit 8
protein | chr3:3399736-3400741 FORWARD LENGTH=525
Length=525
Score = 424 bits (229), Expect = 3e-118
Identities = 250/260 (96%), Gaps = 1/260 (0%)
Strand=Plus/Plus
Query 1 ATCTGAGAAGAGAAGAAG-AAATGGGGAAGCAGCCGGTGAAATTGAAGGCGGTGGTTTAC 59
||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 59 ATCTGGGAAGAGAAAAAGAAAATGGGGAAGCAGCCGGTGAAATTGAAGGCGGTGGTTTAC 118
Query 60 GCACTTTCGCCGTTCCAGCAGAAGATCATGACCGGTCTCTGGAAGGATCTGCCGGAGAAG 119
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 GCACTTTCTCCGTTTCAGCAGAAGATCATGACCGGTCTCTGGAAGGATCTGCCGGAGAAG 178
Query 120 ATCCATCACAAGGTCTCCGAGAATTGGATCAGCGCCACTCTTCTCGTTACCCCTGTCGTT 179
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 ATCCACCACAAGGTCTCTGAGAATTGGATCAGCGCCACTCTTCTCGTTACCCCTGTCGTT 238
Query 180 GCAACCTACTGGTATGCTCAATACTTCAAGGAACAGGAGAAGCTTGAGCACAGATTCTGA 239
| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 239 GGAACCTACTGGTATGCTCAGTATTTCAAGGAACAGGAGAAGCTTGAGCACAGATTCTGA 298
Query 240 AGCATGAAGTCACTCCTTTT 259
||||||||||||||||||||
Sbjct 299 AGCATGAAGTCACTCCTTTT 318
> AT5G05370.1 | Symbols: | Cytochrome b-c1 complex, subunit 8
protein | chr5:1590797-1591903 REVERSE LENGTH=433
Length=433
Score = 263 bits (142), Expect = 6e-70
Identities = 200/228 (88%), Gaps = 3/228 (1%)
Strand=Plus/Plus
Query 19 AAATGGGGAAGCAGCCGGTGAAATTGAAGGCGGTGGTTTACGCACTT-TCGCCGTTCCAG 77
||||||| ||||||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct 33 AAATGGGAAAGCAGCCGGTGAAATTGAAGGCGGTGGTTTACGCG-TTATCGCCGTTTCAG 91
Query 78 CAGAAGATCATGACCGGTCTCTGGAAGGATCTGCCGGAGAAGATCCATCACAAGGTCTCC 137
|||||||||||||| ||||| ||||||||||| ||||||||||| || |||||||||||
Sbjct 92 CAGAAGATCATGACGGGTCTTTGGAAGGATCTTCCGGAGAAGATTCACCACAAGGTCTCA 151
Query 138 GAGAATTGGATCAGCGCCACTCTTCTCGTTACCCCTGTCGTTGCAACCTACTGGTATGCT 197
|||||||||||||| | | ||| ||||| | |||||||| | |||||||| |||||||
Sbjct 152 GAGAATTGGATCAGTACTATTCTCCTCGTCGCTCCTGTCGTCGGAACCTACTCGTATGCT 211
Query 198 CAATACTTCAAGGAACAGGAGAAGCTTGAGCACAGATTCTGAAGCATG 245
|| |||||||| ||||| |||||||| |||||||| |||| |||||||
Sbjct 212 CAGTACTTCAAAGAACAAGAGAAGCTGGAGCACAGGTTCT-AAGCATG 258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11812921015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5