BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928806
Length=324
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10950.1 | Symbols: | Zinc-binding ribosomal protein family... 427 3e-119
> AT3G10950.1 | Symbols: | Zinc-binding ribosomal protein family
protein | chr3:3423893-3424566 FORWARD LENGTH=279
Length=279
Score = 427 bits (231), Expect = 3e-119
Identities = 263/279 (94%), Gaps = 0/279 (0%)
Strand=Plus/Plus
Query 26 ATGACCAAGAGAACGAAGAAGGCTGGAATCGTCGGCAAATATGGTACAAGATATGGTGCC 85
|||||||||||||||||||||||| |||| ||||| |||||||||||| |||||||||||
Sbjct 1 ATGACCAAGAGAACGAAGAAGGCTAGAATTGTCGGAAAATATGGTACACGATATGGTGCC 60
Query 86 AGTCTTAGGAAGCAGATCAAGAAGATGGAAGTGAGTCAACACAGCAAATACTTCTGCGAG 145
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||
Sbjct 61 AGTCTTAGGAAGCAGATCAAGAAGATGGAAGTGAGTCAACACAACAAGTACTTCTGTGAG 120
Query 146 TTTTGCGGCAAGTACGCCGTTAAGAGGAAAGCTGTTGGCATTTGGGGTTGCAAAGATTGC 205
|| ||||| |||||| ||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 121 TTCTGCGGAAAGTACTCCGTTAAGAGGAAAGTTGTTGGCATTTGGGGGTGCAAAGATTGC 180
Query 206 GGAAAAGTGAAAGCAGGCGGTGCATACACTATGAACACGGCTAGTGCTGTGACTGTTAGG 265
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 GGGAAAGTGAAAGCAGGCGGTGCATACACAATGAACACGGCTAGTGCTGTGACTGTTAGG 240
Query 266 AGTACCATTAGGCGTTTGAGAGAGCAAACCGAGAGCTAG 304
|||||||| ||||| ||||||||||||||||||||||||
Sbjct 241 AGTACCATCAGGCGGTTGAGAGAGCAAACCGAGAGCTAG 279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15080324700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5