BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928811

Length=467
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G10985.1 | Symbols: SAG20, WI12, ATWI-12 | senescence associ...   776    0.0  


> AT3G10985.1 | Symbols: SAG20, WI12, ATWI-12 | senescence associated 
gene 20 | chr3:3442528-3443445 FORWARD LENGTH=918
Length=918

 Score =  776 bits (420),  Expect = 0.0
 Identities = 454/470 (97%), Gaps = 3/470 (1%)
 Strand=Plus/Plus

Query  1    GACGTGGTTCTGAAACTGTATGAAGCCCTGAGATCTCGCGACGTTAAATCTGTGCACCAG  60
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  132  GACGTGGTTCTGAAACTGTATGAAGCCCTGAGATCTCGCGACGTCAAATCTGTGCACCAG  191

Query  61   ATCTTAACCCCAGATCTGGAGTATTGGTTCCACGGCCCTCCGCCGCACCAGTTTTTGATG  120
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  192  ATCTTAACCCCAGATCTGGAGTATTGGTTCCACGGTCCTCCGCCGCACCAGTTTTTGATG  251

Query  121  CGCGTACTCACCGGAGGTGTCTCTCCGTCTTCCTCCTCGTTCGAATTCGTACCTCTCTCC  180
            |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct  252  CGCGTACTCACCGGAGGTGTCTCTCCGTCTTCTTCCTCCTTCGAATTCGTACCTCTCTCC  311

Query  181  GTCGTTTCGTTCGGATCTACCGTAATCGCAGAAGGCTGCGACGCCGCGACCTCGATTTCT  240
            |||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct  312  GTCGTTTCCTTCGGATCTACCGTAATCGCGGAAGGCTGCGACGCCGCGACATCGATTTCT  371

Query  241  TGGATCCACGCTTGGACCGTAGCGAATGGGATAATCACACAGGTGAGGGAGTACTCTAAC  300
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  372  TGGATCCACGCTTGGACTGTAGCGAATGGGATAATCACACAGGTGAGGGAGTACTCTAAC  431

Query  301  ACTTCTCTCACCGTCACACGGATCGGTAACGTTGTTGCTGGACGACGCTCTGCTGAGATT  360
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  432  ACTTCTCTCACCGTCACACGGATCGGTAACGTTGTTGCTGGACGACGCTCCGCTGAGATT  491

Query  361  GCGCC---GTCGCATTGTCCCTCCGTGTGGGAAAGCCAATTCTCGGGTCGGGCTGGTAAA  417
            |||||   |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  492  GCGCCTCCGTCGCATTGTTCCTCCGTGTGGGAAAGCCAATTCTCGGGTCGGGCTGGTAAA  551

Query  418  TCCGTACCCGGTTTGGTTCTGGCGATTTGAAACAATTTGGTAAAGTAAGT  467
             ||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct  552  CCCGTACCCGGTTTGGTTCTGGCGATTTGAAAGAGTTTGGTAAAGTAAGT  601



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22203492974


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5