BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928820
Length=1589
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11070.1 | Symbols: | Outer membrane OMP85 family protein |... 2390 0.0
> AT3G11070.1 | Symbols: | Outer membrane OMP85 family protein
| chr3:3467754-3470095 FORWARD LENGTH=1890
Length=1890
Score = 2390 bits (1294), Expect = 0.0
Identities = 1499/1597 (94%), Gaps = 17/1597 (1%)
Strand=Plus/Plus
Query 7 CTATCTCTCTGTCTCATGGCGAATCCGACGGAGAATCTCGACGCGAATCTACCAATCCGA 66
||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||
Sbjct 33 CTATCTCTCTGTCTCATGGCGAATCCGACGGAGAACCTCGACGCGAATCCACAAATCCGA 92
Query 67 GAACCAGAAGCTGAAAAAGAAGTTGAAGAACTTAACGGAGACGAA---GA--A--GAGGA 119
||||||||||||||| |||||||||||||||| |||||| ||||| || | |||||
Sbjct 93 GAACCAGAAGCTGAAGAAGAAGTTGAAGAACTGAACGGATACGAAGGTGACGATGGAGGA 152
Query 120 G--GATTACGAAGGAGAAGACGATGACACCGAGTCGAAATCTCAAACGCGCGAAGGCGGA 177
| ||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 153 GAAGATGACGATGGAGAAGACGATGACACCGAGTCGAAATCTCAAACGCGCGAAAGCGGA 212
Query 178 TCC------GACAGAATCAAGGCGGAATCGCTATTCCGTCGGATGCGAGCTGCTCCTGTG 231
||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 TCCAGTGTAGACAGAATCAAGGCGGAATCGCTATTCCGTCGGATGCGAGCTGCTCCTGTG 272
Query 232 CCGGTTCGTGTTCACGACGTGATTGTCAGTGGGAACGAGAAGACTAAGGACCATATCATT 291
||||| |||||||||||||||||| || |||| |||||||||||||||||||||||||||
Sbjct 273 CCGGTGCGTGTTCACGACGTGATTATCGGTGGAAACGAGAAGACTAAGGACCATATCATT 332
Query 292 GAGGCAGAAGTGGATGCTGTGAGAGAGGCGACCACGTTGCAGGAGCTTCTCGAAGCTTCT 351
|| || ||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 333 GAAGCGGAAGTGGATGCTGTGAGAGAGGCGACCACGTTGCAAGAGCTTCTCGAAGCATCT 392
Query 352 AGGGTTGCCTATTCGAATCTCCGAGCGTTAGATATCTTTGATTCCGTCAACATTACGCTC 411
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 393 AGGGTTGCCAATTCGAATCTCCGTGCGTTAGATATCTTTGATTCCGTCAACATTACGCTT 452
Query 412 GATTCTGGTCCTCCTGAGCTTCATGGTACCACCAATGTGGTAATCGAAGTTGTCGAGAGC 471
|||||||||||||||||||||| |||||| ||||||||||||||||| || |||||||||
Sbjct 453 GATTCTGGTCCTCCTGAGCTTCCTGGTACTACCAATGTGGTAATCGACGTCGTCGAGAGC 512
Query 472 AAAAGCCCTCTCACTGGCCAAATCGGCGCCTACACTAGAGCAGAGGCTAGATCATCGAGC 531
|||||||||||||| |||||||| || ||||||||||||||||||||||||||||| |||
Sbjct 513 AAAAGCCCTCTCACCGGCCAAATTGGTGCCTACACTAGAGCAGAGGCTAGATCATCAAGC 572
Query 532 GTTGAAGCATCTTCGAAGTATAAGAACATTTTTGGTTATGGAGATATTTGGGACGGGTCT 591
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 GTTGAAGCATCTTTGAAGTATAAGAACATTTTTGGTTATGGAGATATTTGGGACGGGTCT 632
Query 592 ATAGTTTATGGATGTGACAACTCTGCTGAGGTTGGCTTGGGGATGTATTTACCAAGGTTC 651
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 633 ATAGTTTATGGCTGTGACAACTCTGCTGAGGTTGGTTTGGGGATGTATTTGCCAAGGTTC 692
Query 652 AGAGGACTT-TCTACTCCTTTTACTTCCCGTCTTTTCCTTTCGACTCAAGACTGGCTTAA 710
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 AGAGGA-TTGTCTACTCCTTTTACTTCCCGTCTTTTCCTTTCGACTCAAGACTGGCTTAA 751
Query 711 GTTTTCATCGTATAAAGAACGATCCCTCGGTCTTTCTCTCGGTCTTCTCTCAAGCAAGTA 770
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 752 GTTTTCATCGTATAAAGAACGATCCCTCGGTCTTTCTCTTGGTCTTTTCTCAAGCAAGTA 811
Query 771 TCACGAGCTGGTCTACACGATTGCTTGGCGTAATCTGATAGATCCATCACAAGCCGCTTC 830
|||||||||| ||||||||||||| |||||||||||||| |||||||||||||| ||| |
Sbjct 812 TCACGAGCTGATCTACACGATTGCGTGGCGTAATCTGATCGATCCATCACAAGCTGCTGC 871
Query 831 AAAATCAATAAGGAGGCAACTGGGACACAGTCTGCTTTCTGCATTGAAGTATACTTTTAA 890
| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 872 AGTATCAATAAGGAGACAACTGGGACACAGTCTGCTTTCTGCGTTGAAGTATACTTTTAG 931
Query 891 ATTTGATCAGAGAAACTCAAACTTGAGGCCAACTAATGGATATGCTTTCATCTCTACTTC 950
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 932 GTTTGATCAGAGAAACTCAAGCTTGAGGCCAACTAATGGATATGCTTTCATCTCTACATC 991
Query 951 TCAAATTGGTGGTCTTGCTCCTGATAGCCGAAGCCTACGCTTCTTGAAGCAGGAAATTGA 1010
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct 992 TCAAATTGGTGGTCTTGCTCCTGATAGCCGAAGCTTACGCTTCCTGAAGCAGGAAGTTGA 1051
Query 1011 TCTTCGATATGCTGTTCCGTTTGGATTTTACAATGCTGCTCTAAACTTTGGCGTGTCTGG 1070
|||||| ||||||||||||||||||||||||||||||||| |||| ||||| ||||||||
Sbjct 1052 TCTTCGGTATGCTGTTCCGTTTGGATTTTACAATGCTGCTATAAATTTTGGTGTGTCTGG 1111
Query 1071 GGGTGTCACCTTTCCGTGGGGAAGCGGATACCAGAACCGCCCTTCCTCTGTACCAGAGAG 1130
||||||| ||||||||||||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct 1112 GGGTGTCTCCTTTCCGTGGGGAAGCGGATACCAGAACCGTCCTTCATCTATACCAGAGAG 1171
Query 1131 ATTCTTCTTGGGTGGCAATTCATCGCCTGTATGCTCTTTGGGTGGACCATCCGCACTATG 1190
|||||||||||||||||||||||||||||| ||||| ||| |||| ||||| || || ||
Sbjct 1172 ATTCTTCTTGGGTGGCAATTCATCGCCTGTGTGCTCCTTGAGTGGGCCATCTGCGCTGTG 1231
Query 1191 GGGATTCAAGACCAGAGGACTTGGTCCCAACGAGCCAAAGAGGAAAGGTGATAGTGAACG 1250
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1232 GGGATTCAAGACCAGAGGAGTTGGTCCCAGTGAGCCAAAGAGGAAAGGTGATAGTGAACG 1291
Query 1251 GGATTTTGTTGGAGGAGATGCTGCGGTGACTGCATTTGCGGATCTCTCATTTGATTTGCC 1310
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1292 GGATTTTGTTGGAGGAGATGCGGCAGTGACTGCATTTGCGGATCTCTCATTTGATTTGCC 1351
Query 1311 AGTGAGATGGTTAAGAGAGAGAGGAATCCACGGGCATGTGTTTGCTTGTGCGGGGAATAT 1370
||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 1352 AGTGAGATGGTTAAGAGAGAGAGGAATCCACGGTCATGTGTTTGCCTGTGCAGGGAATAT 1411
Query 1371 GGCAAAGTTATCAGAGAATGAGTTTAGAAACTTCACTGCTCCAAAGTTCTTGGAGACATT 1430
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1412 GGCGAAGTTATCAGAGAATGAGTTTAGAAACTTCACTGCTCCAAAGTTCTTGGAGACATT 1471
Query 1431 CAGAACTTCAGTTGGTGCTGGAATCGTCTTACCAACTAGTCTATTCCGTATGGAGCTTAA 1490
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1472 CAGAACTTCAGTTGGTGCTGGAATCGTCTTACCAACAAGCCTATTCCGTATGGAGCTTAA 1531
Query 1491 CTACTGCCACATATTGAAGAAACAAGAACACGATCAAGCGAGATCAGGGGTTTTCGTGAC 1550
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1532 CTACTGCCACATATTGAAGAAACAGGAACACGATCAAGCGAGATCAGGGGTTTTCTTGAC 1591
Query 1551 ATTCTCTGCCTCGTCCTGAGAAACTTTAGCTGAAGAA 1587
||||||||| ||||||||||||| ||| |||||||||
Sbjct 1592 ATTCTCTGCTTCGTCCTGAGAAATTTTTGCTGAAGAA 1628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78463451835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5