BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928821
Length=419
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27060.1 | Symbols: AtRLP53, RLP53 | receptor like protein 5... 230 1e-59
AT3G05660.1 | Symbols: AtRLP33, RLP33 | receptor like protein 3... 182 3e-45
> AT5G27060.1 | Symbols: AtRLP53, RLP53 | receptor like protein
53 | chr5:9522534-9525407 REVERSE LENGTH=2874
Length=2874
Score = 230 bits (124), Expect = 1e-59
Identities = 268/333 (80%), Gaps = 27/333 (8%)
Strand=Plus/Plus
Query 21 ATGAAAGGCTTCTGTAACTCAACGAGTATCACTCCTATTACTCTTTCTTTTCTTTTCTTA 80
||| ||||||| || ||||||| |||||||| || ||||||||| |||||| ||||||||
Sbjct 1 ATGGAAGGCTTTTGGAACTCAAAGAGTATCATTCGTATTACTCTCTCTTTTATTTTCTTA 60
Query 81 CTCATTTGT-ATTTTTC-GAGATGTGTTTGCGGTTCCTACTA-AACACTTGTGTCGTCCC 137
|||||||| | ||||| | || ||| |||||| ||| |||| | ||||||||||||||
Sbjct 61 TTCATTTGTCA-TTTTCTG-GACGTGCTTGCGGCTCCAACTAGGA-ACTTGTGTCGTCCC 117
Query 138 GAACAAAGGGATGCACTTCTCGAGTTCAAGAACGAGTTTAAGATTGGGAAGCCTAT-TC- 195
||||||||||||||||| |||| |||||| ||||||||| |||||||||||||| | ||
Sbjct 118 GAACAAAGGGATGCACTCCTCGCGTTCAAAAACGAGTTTGAGATTGGGAAGCCT-TCTCC 176
Query 196 T--TCAATGTAC--T----GGCGTACA-TC-CA----AAGACGGAGTCATGGACCAATAC 241
| ||| |||| | ||| | | || | |||||||| |||||| ||||
Sbjct 177 TGATCATTGTAAGATTTATGGCATTGAATCTCCTCGGAAGACGGACTCATGGGGGAATAA 236
Query 242 CAGCGATTGTTGTAATTGGGAGGGTA-TCACGTGCAATGCCATCTCTGGGGTAGTGATTG 300
|||||| ||||||||||||||||| | ||||||||||||||| || |||| |||||| |
Sbjct 237 CAGCGACTGTTGTAATTGGGAGGG-AGTCACGTGCAATGCCAAGTCCGGGGAAGTGATCG 295
Query 301 AGCTAGACCTTAGTTGCAGTTGCT-TCCATGGC 332
|||||||||| || ||||| | || ||||||||
Sbjct 296 AGCTAGACCTAAGCTGCAGCT-CTCTCCATGGC 327
Score = 76.8 bits (41), Expect = 1e-13
Identities = 58/66 (88%), Gaps = 2/66 (3%)
Strand=Plus/Plus
Query 355 GTTACATACCAATAGTAGTCTTCAAAACCTTC-TTTCTCTAACCACTCTAGACCTTTCAT 413
||| ||| |||| || ||| ||| |||||||| |||| ||||||||||||||||||||||
Sbjct 330 GTTTCATTCCAACAGCAGTATTCGAAACCTTCATTTC-CTAACCACTCTAGACCTTTCAT 388
Query 414 TTAATG 419
||||||
Sbjct 389 TTAATG 394
> AT3G05660.1 | Symbols: AtRLP33, RLP33 | receptor like protein
33 | chr3:1648843-1652001 REVERSE LENGTH=3043
Length=3043
Score = 182 bits (98), Expect = 3e-45
Identities = 229/292 (78%), Gaps = 9/292 (3%)
Strand=Plus/Plus
Query 44 GAGTATCACTCCTATTACTCTTTCTTTTCTTTTCTTACTCATTTGTATTTTTCGAGATGT 103
|||| ||| |||||||||| ||| |||||| ||||| || ||| || |||||||| |||
Sbjct 3 GAGTCTCATTCCTATTACTTTTTATTTTCTCTTCTTGTTCTTTTCTAATTTTCGAGGTGT 62
Query 104 GTTTGCGGTTCCTACTAAACACTTGTGTCGTCCCGAACAAAGGGATGCACTTCTCGAGTT 163
||||| ||||||| || |||||| |||| | ||||||||| |||||||||||||||||
Sbjct 63 TTTTGCTGTTCCTAATATACACTTATGTCATTTCGAACAAAGAGATGCACTTCTCGAGTT 122
Query 164 CAAGAACGAGTTTAAGATTGGGAAGCCTA-TTCTTCAATGTACTGGCGTACATCCAAAGA 222
||||||||||||||||||| ||||||| || || ||| | | | | || ||||
Sbjct 123 CAAGAACGAGTTTAAGATTAAGAAGCCTTGTT-TTGGTTGTCCAAG--TCC-TCTGAAGA 178
Query 223 CGGAGTCATGG-ACCAATACCAGCGATTGTTGTAATTGGGAGGGTATCACGTGCAATGCC 281
| |||||||| | ||| |||||| |||||| ||||||| ||||| || ||| ||||
Sbjct 179 CAAAGTCATGGGAG-AATGGCAGCGACTGTTGTCATTGGGATGGTATTACTTGCGATGCT 237
Query 282 ATCTCTGGGGTAGTGATTGAGCTAGACCTTA-GTTGCAGTTGCTTCCATGGC 332
| | |||| ||| || ||| ||||||||| || |||| ||| ||||||||
Sbjct 238 AAGACCGGGGAAGTAATCGAGATAGACCTTATGT-GCAGCTGCCTCCATGGC 288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19855760855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5