BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928823
Length=809
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11100.1 | Symbols: | sequence-specific DNA binding transcr... 1242 0.0
> AT3G11100.1 | Symbols: | sequence-specific DNA binding transcription
factors | chr3:3476187-3477405 REVERSE LENGTH=1138
Length=1138
Score = 1242 bits (672), Expect = 0.0
Identities = 767/810 (95%), Gaps = 17/810 (2%)
Strand=Plus/Plus
Query 1 CCTCCTCTCCTCCCCCCTCCGAGATGGAGACGACGCCGGAGACTCAGTCCAAGACTCACC 60
||||||||| | ||| |||||||||||||||||||||||||||||||| | | |
Sbjct 63 CCTCCTCTCTTTCCCACTCCGAGATGGAGACGACGCCGGAGACTCAGT-C--G----A-- 113
Query 61 AGAGCGGGTCTAACCGTCTACCGGCGGGAAGAGAGGATTGGTGGAGCGAAGACGCGACGG 120
||| | || ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 114 AGA-C---TC--ACCGTCTACCGGCGGGAAGAGAGGATTGGTGGAGCGAAGACGCTACGG 167
Query 121 CGACATTGATCGAAGCTTGGGGAGATCGTTACGTCAATCTCAACCGTGGG-AATCTCCGG 179
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 168 CGACATTGATCGAAGCTTGGGGAGATCGTTACGTCAATCTCAACCG-GGGAAATCTCCGG 226
Query 180 CAAAACGATTGGAAAGAAGTCGCCGACGCCGTCAATTCTAGCCACGGGAACGGCCGGCCA 239
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 227 CAAAACGATTGGAAAGAAGTCGCCGACGCCGTCAATTCAAGCCACGGGAATGGCCGGCCA 286
Query 240 AAGACCGACGTGCAGTGCAAAAACCGGATCGATACGTTGAAGAAGAAGTACAAAACTGAA 299
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 AAGACCGATGTACAGTGCAAAAACCGGATCGATACGTTGAAGAAGAAGTACAAAACTGAA 346
Query 300 AAGGCGAAACCTTTATCGAATTGGTGCTTCTTTGATAGACTCGATTTCTTAATCGGTCCG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 AAGGCGAAACCTTTATCGAATTGGTGCTTCTTTGATAGACTCGATTTCTTAATCGGTCCG 406
Query 360 GTTATGAAGAAATCGTCCGGCGGAGTTGTTAAATCGGCGTTTATGAACCCTAATTTGAAT 419
|||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||
Sbjct 407 GTTATGAAGAAATCGTCCGGTGCTGTTGTTAAATCGGCGTTGATGAACCCTAATTTGAAT 466
Query 420 CCTACTGGATCTAAATCAACTGGAAGCTCTCTTGACGACgatgatgatgatgatgatgat 479
||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct 467 CCTACTGGATCTAAATCAACTGGTAGCTCTCTCGATGACGATGATGATGATGATGATGAC 526
Query 480 gacgaagaagatgatgatgatgCGGGTGATTGGGGATTTGTGGTGAGGAAGCATCGTAAA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 GACGAAGAAGATGATGATGATGCGGGTGATTGGGGATTTGTGGTGAGGAAGCATCGTAAA 586
Query 540 GTTGAAGATGTAGATCCGAGTGAAGGATCGGCCTTTAGGGAATTGGCGAGATCTATTCTG 599
||||||||||||||| ||||||||||||| ||||||||||| | |||||||| ||||||
Sbjct 587 GTTGAAGATGTAGATTCGAGTGAAGGATCAGCCTTTAGGGAGCTAGCGAGATCGATTCTG 646
Query 600 AAGTTAGGGGAAGCGTTTGAAAGAATCGAGGGTAAGAAGCAACAGATGATGATTGAATTG 659
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 647 AAGTTAGGGGAAGCGTTTGAGAGAATCGAGGGGAAGAAGCAACAGATGATGATTGAATTG 706
Query 660 GAGAAGCAGAGAATGGAAGTTGCAAAGGAGCTTGAGTTACAACGAATGAATATGTTGATG 719
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 GAGAAACAGAGAATGGAAGTTGCAAAGGAGCTTGAGTTACAACGAATGAATATGTTGATG 766
Query 720 GAGATGCAATTGGAGCTTGAGAAATCTAAACTTGGGAAACGAAGAGCTGCTTCAGGTAAG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 GAGATGCAATTGGAGCTTGAGAAATCTAAACTTGGGAAACGAAGAGCTGCTTCAGGTAAG 826
Query 780 AAGTTGTAGGATTATAGATTGTGGAGGAGT 809
||||||||||||| ||||||||||||||||
Sbjct 827 AAGTTGTAGGATTGTAGATTGTGGAGGAGT 856
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39383571248
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5