BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg928824

Length=521
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G11110.1 | Symbols:  | RING/U-box superfamily protein | chr3...   701    0.0  


> AT3G11110.1 | Symbols:  | RING/U-box superfamily protein | chr3:3479979-3480455 
FORWARD LENGTH=477
Length=477

 Score =  701 bits (379),  Expect = 0.0
 Identities = 451/484 (93%), Gaps = 11/484 (2%)
 Strand=Plus/Plus

Query  21   ATGACGTCATCTTCACCGTCTCCACAAGCCTCGATGATTTTGTACTGGCACGAGAACCAA  80
            |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct  1    ATGACGTCATCTTCACCGTCTCCACAAGCCTCGATGCTTTTGTACTGGCACGAGAATCAA  60

Query  81   TACGACGACCGCAACTTCCAGATTCATGGCCGGACACTCTTCTTCGCCATGGCTCTATTC  140
            ||||||||||| |||||||||||||||||||||||||||||||||||| | ||| |||||
Sbjct  61   TACGACGACCGGAACTTCCAGATTCATGGCCGGACACTCTTCTTCGCCTTAGCTTTATTC  120

Query  141  TCCGTCGTCCTCTTCTTCGCACTACTCACTCTCTACATCCACCGGAACTGCCTCCCCCGG  200
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TCCGTCGTGCTCTTCTTCGCACTACTCACTCTCTACATCCACCGGAACTGCCTCCCCCGG  180

Query  201  GATTCTCTTAATCTCCACGCACCCTCTTCTGATCAACACACACGTTGTGC-TAGCGGAGG  259
            |||||| | |||||||||||  ||||| | |||| || ||| |||||  | |||||||||
Sbjct  181  GATTCTATCAATCTCCACGCGTCCTCTCCCGATCGACTCACGCGTTG-CCGTAGCGGAGG  239

Query  260  GCTTGATCCGGC-GACTATTCGGAGCTTGCCGGTGGTGCTTT-CCAGGAGAG-AAGCGGC  316
            |||||||||||| ||  ||||||||||||||||||||||||| || |||||| ||| |||
Sbjct  240  GCTTGATCCGGCGGA-GATTCGGAGCTTGCCGGTGGTGCTTTGCC-GGAGAGAAAG-GGC  296

Query  317  ggaggaggaggaggaggagaaggagTGTTGTATATGTCTAGGTGGTTTTGAAGAAGGAGA  376
               ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  297  ---GGAGGAGGAGGAGGAGAAGGAGTGTTGTATATGTCTAGGTGGTTTCGAAGAAGGAGA  353

Query  377  GAAGATGAAAGTGCTTCCTCCGTGTAGCCATTGTTACCACTGCGAATGTGTGGATAGGTG  436
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  354  GAAGATGAAAGTGCTTCCTCCGTGTAGCCATTGTTACCACTGCGAATGTGTGGATCGGTG  413

Query  437  GCTTAAGACCGAGTCGAGTTGTCCGCTCTGCCGAGTCTCCATCCGAGTCGACTCGTCAAG  496
            |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  414  GCTTAAAACCGAGTCGAGTTGTCCGCTCTGCCGAGTCTCCATCCGTGTCGACTCGTCAAG  473

Query  497  CTAA  500
            ||||
Sbjct  474  CTAA  477



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24916136912


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5