BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928831
Length=1160
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11180.2 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1720 0.0
AT5G05600.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 809 0.0
> AT3G11180.2 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr3:3504204-3507057
FORWARD LENGTH=1443
Length=1443
Score = 1720 bits (931), Expect = 0.0
Identities = 1046/1101 (95%), Gaps = 10/1101 (1%)
Strand=Plus/Plus
Query 1 AAGAAGTCAAAATAGAC-A-A---A-ATGAGCGACCAAAACAAGAACAAGATCGAAACCA 54
||||||||||||||||| | | | |||||||||||| |||||||||||||||||| ||
Sbjct 104 AAGAAGTCAAAATAGACAACATGCACATGAGCGACCAAGACAAGAACAAGATCGAAATCA 163
Query 55 AGAACAAGAATGGCCTCGGCGAAAAGTGGCCAGAACCCATCGTCCGAGTCCAATCTCTAG 114
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 AGAACAAGAGTGGCCTCGGCGAAAAGTGGCCAGAACCCATCGTCCGAGTCCAATCTCTAG 223
Query 115 CAGAGAAG-AACCTCACTACCCTCCCCGACCGTTACATCAAGCCGCCATCTCAACGCCCT 173
| ||| || |||||||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct 224 CCGAG-AGCAACCTCACTAGTCTCCCTGACCGTTACATCAAGCCGCCGTCTCAACGCCCT 282
Query 174 CAAACCACTACCATCAACCACGAACCGGAAGCAGCTGCCATAAATATACCGATCATAGAC 233
|||||||| | |||| ||||| ||||||||| ||||| ||||||||||||||||||||||
Sbjct 283 CAAACCACCATCATCGACCACCAACCGGAAGTAGCTGACATAAATATACCGATCATAGAC 342
Query 234 CTAGACAGCCTCTTCTCCGGCAATGAAGACGACATGAAGAGAATATCGGAGGCATGCCGT 293
|||||||| || ||||| |||||||||||||||| |||||| ||||| ||||||||||||
Sbjct 343 CTAGACAGTCTATTCTCTGGCAATGAAGACGACAAGAAGAGGATATCCGAGGCATGCCGT 402
Query 294 GAATGGGGATTCTTTCAGGTGATCAACCATGGGGTGAAACCGGAGCTGATGGACGCAGCT 353
|||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct 403 GAATGGGGATTCTTCCAGGTAATCAACCATGGCGTGAAGCCGGAGCTGATGGACGCAGCT 462
Query 354 AGAGAAACTTGGAAAAGCTTCTTTAATTTGCCGGTTGAAGCCAAAGAAGTTTACTCAAAC 413
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 463 AGAGAAACTTGGAAGAGCTTCTTTAATTTGCCTGTTGAAGCCAAAGAAGTTTACTCAAAC 522
Query 414 TCCCCAAGAACCTATGAAGGATATGGAAGCAGATTGGGTGTGGAAAAAGGAGCCATTCTT 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 TCCCCAAGAACCTATGAAGGATATGGAAGCAGATTGGGTGTGGAAAAAGGAGCCATTCTT 582
Query 474 GATTGGAATGATTATTACTATCTCCATTTTCTTCCTCTTTCCTTGAAGGATTTCAACAAA 533
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 583 GATTGGAATGATTATTACTATCTCCATTTTCTTCCTCTTGCCTTGAAGGATTTCAACAAA 642
Query 534 TGGCCTTCTTTACCTTCCAACATTAGAGAAGTGATTGATGAGTACGGCAAAGAACTAGTG 593
|||||||||||||||||||||||||||||| ||| |||||||||||| || |||||||||
Sbjct 643 TGGCCTTCTTTACCTTCCAACATTAGAGAAATGAATGATGAGTACGGTAAGGAACTAGTG 702
Query 594 AAGCTAGGTGGGAGACTAATGACGATCTTATCGTCAAATTTGGGGCTAAGAGAAGAACAA 653
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 703 AAGCTAGGTGGGAGACTAATGACGATCTTATCGTCAAATTTGGGGCTAAGAGCAGAACAA 762
Query 654 CTTCAAGAAGCATTTGGTGGAGAAGACATTGGTGCATGTTTGAGGGTTAATTATTACCCA 713
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 763 CTTCAAGAAGCATTTGGTGGAGAAGACGTTGGTGCATGTTTGAGGGTTAATTATTACCCA 822
Query 714 AAATGCCCTAAACCGGAACTTGCCCTCGGCCTCTCCCCTCATTCCGATCCCGGCGGCATG 773
|| |||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 823 AAGTGCCCTCAACCGGAGCTTGCCCTCGGCCTCTCCCCTCATTCTGATCCCGGCGGCATG 882
Query 774 ACCATCCTCTTGCCGGATGATCAAGTCGTCGGCCTTCAAGTCCGTCACGATGACACGTGG 833
||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||
Sbjct 883 ACCATCCTCTTGCCGGACGATCAAGTCGTCGGCCTTCAGGTCCGTCACGGTGACACGTGG 942
Query 834 ATCACCGTCAATCCTCTCCGCCATGCTTTTATCGTCAATATCGGCGATCAAATTCAGATA 893
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 943 ATCACTGTCAATCCTCTCCGCCACGCTTTTATCGTCAATATCGGCGATCAAATTCAGATA 1002
Query 894 CTAAGCAATTCGAAATACAAGAGCGTGGAACATCGAGTGATAGTGAATTCGGAAAAAGAA 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 CTAAGCAATTCGAAATACAAGAGCGTGGAACATCGAGTGATAGTGAATTCGGAAAAAGAA 1062
Query 954 AGGGTTTCACTAGCATTCTTCTATAACCCTAAGAGTGACATTCCGATCCAACCAATGCAA 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 AGGGTTTCACTAGCATTCTTCTATAACCCTAAGAGTGACATTCCGATCCAACCAATGCAA 1122
Query 1014 CAACTTGTCACCTCTACGATGCCTCC-TTCATATCCTCCCATGACCTTTGATCAGTATAG 1072
|||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 1123 CAACTTGTCACCTCTACGATGCCTCCCTTG-TATCCTCCCATGACCTTTGATCAATATAG 1181
Query 1073 ACTCTTTATTAGAACGCAAGG 1093
|||||| ||||||||||||||
Sbjct 1182 ACTCTTCATTAGAACGCAAGG 1202
> AT5G05600.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr5:1672120-1674739
FORWARD LENGTH=1399
Length=1399
Score = 809 bits (438), Expect = 0.0
Identities = 735/878 (84%), Gaps = 22/878 (3%)
Strand=Plus/Plus
Query 276 ATATCGGAGGCATGCCGTGAATGGGGATTCTTTCAGGTGATCAACCATGGGGTGAAACCG 335
||||||||||| ||||||| ||||| ||||| |||||| | ||||| ||||| ||||||
Sbjct 399 ATATCGGAGGCTTGCCGTGGGTGGGGGTTCTTCCAGGTGGTGAACCACGGGGTCAAACCG 458
Query 336 GAGCTGATGGACGCAGCTAGAGA-AACTTGGA-AAAGCTTCTTT-AATTTGCCGGTTGAA 392
|||||||||||||| ||||| || || ||||| | || || ||| || |||||||| ||
Sbjct 459 GAGCTGATGGACGCGGCTAGGGAGAA-TTGGAGAGAG-TT-TTTCCATATGCCGGTT-AA 514
Query 393 -GCCAAAGAAG-TTTACTCAAACTCCCCAAGAACCTATGAAGGATATGGAAGCAGATTGG 450
||||||| || |||||||||||| ||||||||||| ||||| |||||||| ||| | |
Sbjct 515 TGCCAAAG-AGACTTACTCAAACTCACCAAGAACCTACGAAGGCTATGGAAGTAGACTAG 573
Query 451 GTGTGGAAAAAGGAGCCATTCTTGATTGGAATGATTATTACTATCTCCATTTTCTTCCTC 510
|||| || |||||||| | ||||||||||| ||||||||||| ||||||| |||||||||
Sbjct 574 GTGTTGAGAAAGGAGCAAGTCTTGATTGGAGTGATTATTACTTTCTCCATCTTCTTCCTC 633
Query 511 TTTC-CTTGAAGGATTTCAACAAATGGCCTTCTTTACCTTCCAACATTAGAGAAGTGATT 569
|| ||||| || |||||||| ||||||||||| ||| ||| ||| |||||||||||
Sbjct 634 -ATCATTTGAAAGACTTCAACAAGTGGCCTTCTTTTCCTCCCACCATAAGAGAAGTGATC 692
Query 570 GATGAGTACGGCAAAGAACTAGTGAAGCTAGGTGGGAGACTAATGACGATCTTATCGTCA 629
||||| |||||| |||| |||||||||||| |||||||| | |||| | | |||||| ||
Sbjct 693 GATGAATACGGCGAAGAGCTAGTGAAGCTAAGTGGGAGAATTATGAGGGTATTATCGACA 752
Query 630 AATTTGGGGCTAAGAGAAGAACAA-CTTCAAGAAGCATTTGGTGGAGAAGACATTGGTGC 688
|| ||||| |||| || || | || |||||||||||||||| || ||| ||||||| ||
Sbjct 753 AACTTGGGACTAAAAG-AGGATAAGTTTCAAGAAGCATTTGGAGGTGAAAACATTGGGGC 811
Query 689 ATGTTTGAGGGTTAATTATTACCCAAAATGCCCTAAACCGGAACTTGCCCTCGGCCTCTC 748
||||||||||||||||||||||||||||||||| |||||| || || || || |||||
Sbjct 812 GTGTTTGAGGGTTAATTATTACCCAAAATGCCCTCGACCGGAGCTGGCTCTTGGTCTCTC 871
Query 749 CCCTCATTCCGATCCCGGCGGCATGACCATCCTCTTGCCGGATGATCAAGTCGTCGGCCT 808
|| || |||||||| ||||| |||||||| ||||| ||||| ||||||||| |||| ||
Sbjct 872 TCCACACTCCGATCCTGGCGGTATGACCATTCTCTTACCGGACGATCAAGTCTTCGGTCT 931
Query 809 TCAAGTCCGTCACGATGACACGTGGATCACCGTCAATCCTC-TCCGCCATGCTTTTATCG 867
|| || ||| | ||||||||||||||||||||||| |||| ||| ||||||||| ||||
Sbjct 932 CCAGGTTCGTAAAGATGACACGTGGATCACCGTCAAGCCTCATCC-CCATGCTTTCATCG 990
Query 868 TCAATATCGGCGATCAAATTCAGATACTAAGCAATTCGAA-ATACAAGAGCGTGGAACAT 926
||||||| || |||||||| |||||||||||||| || || ||||||||| ||||| |||
Sbjct 991 TCAATATTGGTGATCAAATACAGATACTAAGCAACTC-AACATACAAGAGTGTGGAGCAT 1049
Query 927 CGAGTGATAGTGAATTCGGAAAAAGAAAGGGTTTCACTAGCATTCTTCTATAACCCTAAG 986
||||||||||||| ||||| || || || |||||||| || |||||||| || |||||
Sbjct 1050 AGAGTGATAGTGAACTCGGACAAGGAGAGAGTTTCACTTGCCTTCTTCTACAATCCTAAA 1109
Query 987 AGTGACATTCCGATCCAACCAATGCAACAACTTG--TCACCTCTACGATGCCTCCTTCAT 1044
|| || ||||||||||||||| | ||| |||||| ||| ||| | || ||||||| ||
Sbjct 1110 AGCGATATTCCGATCCAACCATTACAAGAACTTGTATCAACTC-ATAAT-CCTCCTTTAT 1167
Query 1045 ATCCTCCCATGACCTTTGATCAGTATAGACTCTTTATTAGAACGCAAGGTCCACGTGGAA 1104
| ||||||||||||||||||||||||||||||||||| ||||| |||||||||| || |
Sbjct 1168 ACCCTCCCATGACCTTTGATCAGTATAGACTCTTTATCAGAACTCAAGGTCCACAAGGCA 1227
Query 1105 AATCCCACGTTGAGTCTCATCTATCCCCTCGTTAATTG 1142
||||||| ||||| |||||| | || ||||||| ||||
Sbjct 1228 AATCCCATGTTGAATCTCATATTTCTCCTCGTTGATTG 1265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56927418030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5