BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928861
Length=1903
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11460.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2939 0.0
> AT3G11460.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:3608250-3610121 FORWARD LENGTH=1872
Length=1872
Score = 2939 bits (1591), Expect = 0.0
Identities = 1786/1878 (95%), Gaps = 21/1878 (1%)
Strand=Plus/Plus
Query 21 ATGACCGTCGTTCCAAGCTTTGTACGGAA------C-TC-C-GCGGTGGCTTCGACGTCA 71
|||| ||||||| |||||||||||||||| | || | ||||||||||||||| ||
Sbjct 1 ATGATCGTCGTTACAAGCTTTGTACGGAACTCCGCCGTCGCTGCGGTGGCTTCGACGCCA 60
Query 72 TGGAACGTGCGTCTGAGAGAGCTCGCATATCAGTCATTGTTCACTGAATCTATCTCTCTT 131
|||||||| ||| |||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 61 TGGAACGTACGTTTGAGAGAGCTCGCATATCAGTCATTGTTTTCTGAATCTATATCTCTT 120
Query 132 TACCGGTCAATGCTCCGTTCAGGTTCTTCTCCCGACGCGTTCTCTTTCCCTTTCATTCTC 191
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 TACCGGTCAATGCTCCGTTCTGGTTCTTCTCCCGACGCGTTCTCTTTCCCTTTCATTCTC 180
Query 192 AAGTCATGTGCTTCCCTTTCGCTCCCTGTCTCCGGCCAACAGCTCCATTGCCACGTGATC 251
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 181 AAGTCTTGTGCTTCCCTTTCGCTCCCTGTCTCCGGCCAACAGCTACATTGCCACGTGACC 240
Query 252 AGAGGGGGTTGCGAAG-CTGAGCCCTTTGTGCTGACGGCTCTGATCTCTATGTACTGTAA 310
| ||| ||||||| || ||||||| ||||| || |||||||||||||| ||||| |||||
Sbjct 241 AAAGGCGGTTGCG-AGACTGAGCCGTTTGTACTAACGGCTCTGATCTCAATGTATTGTAA 299
Query 311 ATGCGGTTTGGTAG-AGGATGCACGCAAGGTGTTCGAAGAAAATCCTCAGTCAAGTCAGC 369
|||||||||||| | | |||||||| || |||||||||||||||||||||||||||||||
Sbjct 300 ATGCGGTTTGGTTGCA-GATGCACGTAAAGTGTTCGAAGAAAATCCTCAGTCAAGTCAGC 358
Query 370 TTGGTGTTTGTTACAACGCTTTAATATCTGGGTATACAGCAAACTCGAAGGTCTCTGATG 429
|| ||||||||||||| ||||| ||||||||||| |||||||||||||||||| ||||||
Sbjct 359 TTAGTGTTTGTTACAATGCTTTGATATCTGGGTACACAGCAAACTCGAAGGTCACTGATG 418
Query 430 CTGCGTTTATGTTTCGTAGAATGAAGGAAACTGGCGTATCTGTGGATTCAGTTACAATAC 489
|||||| ||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 419 CTGCGTATATGTTTCGTAGAATGAAGGAAACTGGTGTGTCTGTGGATTCAGTTACAATGC 478
Query 490 TTGGGCTTGTCCCGCTTTGCACGGTTCCTGAATACCTCTGGCTTGGGAGGTCTCTTCACG 549
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TTGGGCTTGTCCCGCTATGCACGGTTCCTGAATACCTCTGGCTTGGGAGGTCTCTTCACG 538
Query 550 GTGAATGTGTTAAAGGAGGAACAT--ATTCTGAAGTAGCTGTTTTGAATAGTTTCATCAC 607
|| |||||||||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct 539 GTCAATGTGTTAAAGGAGG-AC-TGGATTCTGAAGTAGCTGTTTTGAATAGTTTCATCAC 596
Query 608 GATGTACATGAAATGCGGGTCGGTAGAATCGGGTACGAGGTTGTTCGATGAGATGCCTGT 667
||||||||||||||||||||||||||| | |||| ||||||||| ||||||||||||||
Sbjct 597 AATGTACATGAAATGCGGGTCGGTAGAAGCTGGTAGGAGGTTGTTTGATGAGATGCCTGT 656
Query 668 GAAGGGTTTGATTACCTGGAATGCTGTGATTTCTGGATATTCACAGAACGGGCTAGCTTA 727
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GAAGGGTTTGATTACTTGGAATGCTGTGATTTCTGGATATTCACAGAACGGGCTAGCTTA 716
Query 728 CGATGTTCTGGAACTTTATGAGCAGATGAAATCATCGGGTGTTTGTCCTGATCCTTTTAC 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CGATGTTCTGGAACTTTATGAGCAGATGAAATCATCGGGTGTTTGTCCTGATCCTTTTAC 776
Query 788 ATTGGTTAGTGTTTTGTCTTCTTGTGCCCATCTTGGAGCCAAGAAGATTGGTCACGAAGT 847
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 777 ATTGGTTAGTGTTCTGTCTTCTTGTGCCCATCTTGGAGCTAAGAAGATTGGTCACGAAGT 836
Query 848 AGGGGAGTTAGTAGAAGCCAATGGTTTTGCACCAAATGTGTTTT-TAAGCAATGCATTGA 906
|||| ||||||||||| |||||||||||| ||||||||| |||| |||||||||||| ||
Sbjct 837 AGGGAAGTTAGTAGAATCCAATGGTTTTGTACCAAATGT-TTTTGTAAGCAATGCATCGA 895
Query 907 TTAGTATGTATGCTAGATGCGGTAACTTGGCAAAGGCACGTGCTGTTTTCGACATCATGC 966
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TTAGCATGTATGCTAGATGCGGTAACTTGGCAAAGGCACGTGCTGTTTTCGACATCATGC 955
Query 967 CTGTAAAAAGCTTAGTTTCATGGACCGCCATGATAGGTTGTTATGGGATGCATGGAATGG 1026
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 956 CTGTAAAAAGCTTAGTTTCATGGACCGCCATGATTGGTTGCTATGGGATGCATGGAATGG 1015
Query 1027 GAGAGACTGGTCTTACGCTTTTTGATGATATGATAAAAAGAGGCATAAGACCCGATGGAG 1086
|||||| ||| |||| |||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1016 GAGAGATTGGGCTTATGCTTTTTGATGATATGATAAAAAGAGGCATAAGACCAGATGGGG 1075
Query 1087 CGGTGTTTGTAATGGTTTTATCTGCTTGCGGCCATTCAGGGCTAACAGATAAAGGTTTAG 1146
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1076 CGGTGTTTGTAATGGTTTTATCTGCTTGCAGCCATTCAGGGCTAACGGATAAAGGTTTAG 1135
Query 1147 AGTTATTTAGTGCGATGAAGAGAGAGTATAAGCTGGAGCCTGGTCCTGAACACTACTCTT 1206
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 AGTTATTTAGAGCGATGAAGAGAGAGTATAAGCTGGAGCCTGGTCCTGAACACTACTCTT 1195
Query 1207 GCTTAGTTGATCTACTCGGAAGAGCTGGTCGACTAGATGAAGCCATGGAGTTTATAAATT 1266
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
Sbjct 1196 GTTTAGTTGATCTACTCGGAAGAGCTGGTCGGCTAGATGAAGCCATGGAGTTTATAGAGT 1255
Query 1267 CAATGCCTGTTGAACCGGACGGTGCTGTTTGGGGTGCTCTCTTGGGTGCATGTAAAATCC 1326
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1256 CAATGCCTGTTGAACCGGACGGTGCTGTTTGGGGTGCTCTATTGGGTGCTTGTAAAATCC 1315
Query 1327 ATAAGAATGTGGATATGGCAGAGTTAGCTTTTGCAAAGGTGATTGAGTTTGAACCCA-TG 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1316 ATAAGAATGTGGATATGGCAGAGTTAGCTTTTGCAAAGGTGATTGAGTTTGAACCCAAT- 1374
Query 1386 AACATTGGCTACTATGTATTGATGTCAAATATATATTTAGACTCGAAAAACCAAGAAGGA 1445
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1375 AACATTGGCTACTATGTATTGATGTCAAATATATATTCAGACTCGAAAAACCAAGAAGGA 1434
Query 1446 ATCTGGAGAATCCGGGTAATGATGAGAGAGAGAGCATTCAGGAAAAAGCCTGGGTATAGT 1505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 ATCTGGAGAATCCGGGTAATGATGAGAGAGAGAGCATTCAGGAAAAAGCCTGGGTATAGT 1494
Query 1506 TATGTGGAACACAAGGGAAAAGTTCACTTGTTTTTAGCTGGCGATAGAAGTCATGAGCAA 1565
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 TATGTGGAACACAAGGGAAGAGTTCACTTGTTTTTAGCTGGCGATAGAAGTCATGAGCAA 1554
Query 1566 ACAGAGGAAGTCCATAGAATGTTGGATGAGTTAGAGACTTCTGTGATGGAGCTTGCAGGA 1625
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1555 ACAGAGGAAGTCCATAGAATGTTGGATGAGTTAGAGACTTCTGTGATGGAGCTTGCGGGA 1614
Query 1626 AACATGGACTGTGATAGAGGCGAAGAGGTTTCGAGCACTACCCGTGAGCATAGCGAGAGG 1685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 AACATGGACTGTGATAGAGGCGAAGAGGTTTCGAGCACTACCCGTGAGCATAGCGAGAGG 1674
Query 1686 TTAGCAATAGCTTTTGGGATTCTCAACAGTATTCCAGGCACAGAAATTCTCGTGATAAAG 1745
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1675 TTAGCAATAGCTTTTGGGATTCTCAACAGTATTCCAGGCACAGAAATTCTTGTGATAAAG 1734
Query 1746 AATTTGAGGGTTTGTGAAGATTGTCATGTGTTTATCAAGCTGGTTAGCAAGATTGTAGAT 1805
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1735 AATTTGAGGGTTTGTGAAGATTGTCATGTGTTCCTCAAGCAGGTTAGCAAGATTGTAGAT 1794
Query 1806 CGCCGGTTTGTTGTAAGAGATGCATCTCGGTTCCACTATTTCAAAGACGGGGTCTGCTCG 1865
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1795 CGCCAGTTTGTTGTAAGGGATGCATCTCGGTTCCACTATTTCAAAGACGGGGTCTGCTCG 1854
Query 1866 TGCAAAGATTACTGGTGA 1883
||||||||||||||||||
Sbjct 1855 TGCAAAGATTACTGGTGA 1872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94226422965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5