BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg928861 Length=1903 Score E Sequences producing significant alignments: (Bits) Value AT3G11460.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2939 0.0 > AT3G11460.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:3608250-3610121 FORWARD LENGTH=1872 Length=1872 Score = 2939 bits (1591), Expect = 0.0 Identities = 1786/1878 (95%), Gaps = 21/1878 (1%) Strand=Plus/Plus Query 21 ATGACCGTCGTTCCAAGCTTTGTACGGAA------C-TC-C-GCGGTGGCTTCGACGTCA 71 |||| ||||||| |||||||||||||||| | || | ||||||||||||||| || Sbjct 1 ATGATCGTCGTTACAAGCTTTGTACGGAACTCCGCCGTCGCTGCGGTGGCTTCGACGCCA 60 Query 72 TGGAACGTGCGTCTGAGAGAGCTCGCATATCAGTCATTGTTCACTGAATCTATCTCTCTT 131 |||||||| ||| |||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 61 TGGAACGTACGTTTGAGAGAGCTCGCATATCAGTCATTGTTTTCTGAATCTATATCTCTT 120 Query 132 TACCGGTCAATGCTCCGTTCAGGTTCTTCTCCCGACGCGTTCTCTTTCCCTTTCATTCTC 191 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 121 TACCGGTCAATGCTCCGTTCTGGTTCTTCTCCCGACGCGTTCTCTTTCCCTTTCATTCTC 180 Query 192 AAGTCATGTGCTTCCCTTTCGCTCCCTGTCTCCGGCCAACAGCTCCATTGCCACGTGATC 251 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | Sbjct 181 AAGTCTTGTGCTTCCCTTTCGCTCCCTGTCTCCGGCCAACAGCTACATTGCCACGTGACC 240 Query 252 AGAGGGGGTTGCGAAG-CTGAGCCCTTTGTGCTGACGGCTCTGATCTCTATGTACTGTAA 310 | ||| ||||||| || ||||||| ||||| || |||||||||||||| ||||| ||||| Sbjct 241 AAAGGCGGTTGCG-AGACTGAGCCGTTTGTACTAACGGCTCTGATCTCAATGTATTGTAA 299 Query 311 ATGCGGTTTGGTAG-AGGATGCACGCAAGGTGTTCGAAGAAAATCCTCAGTCAAGTCAGC 369 |||||||||||| | | |||||||| || ||||||||||||||||||||||||||||||| Sbjct 300 ATGCGGTTTGGTTGCA-GATGCACGTAAAGTGTTCGAAGAAAATCCTCAGTCAAGTCAGC 358 Query 370 TTGGTGTTTGTTACAACGCTTTAATATCTGGGTATACAGCAAACTCGAAGGTCTCTGATG 429 || ||||||||||||| ||||| ||||||||||| |||||||||||||||||| |||||| Sbjct 359 TTAGTGTTTGTTACAATGCTTTGATATCTGGGTACACAGCAAACTCGAAGGTCACTGATG 418 Query 430 CTGCGTTTATGTTTCGTAGAATGAAGGAAACTGGCGTATCTGTGGATTCAGTTACAATAC 489 |||||| ||||||||||||||||||||||||||| || |||||||||||||||||||| | Sbjct 419 CTGCGTATATGTTTCGTAGAATGAAGGAAACTGGTGTGTCTGTGGATTCAGTTACAATGC 478 Query 490 TTGGGCTTGTCCCGCTTTGCACGGTTCCTGAATACCTCTGGCTTGGGAGGTCTCTTCACG 549 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 TTGGGCTTGTCCCGCTATGCACGGTTCCTGAATACCTCTGGCTTGGGAGGTCTCTTCACG 538 Query 550 GTGAATGTGTTAAAGGAGGAACAT--ATTCTGAAGTAGCTGTTTTGAATAGTTTCATCAC 607 || |||||||||||||||| || | |||||||||||||||||||||||||||||||||| Sbjct 539 GTCAATGTGTTAAAGGAGG-AC-TGGATTCTGAAGTAGCTGTTTTGAATAGTTTCATCAC 596 Query 608 GATGTACATGAAATGCGGGTCGGTAGAATCGGGTACGAGGTTGTTCGATGAGATGCCTGT 667 ||||||||||||||||||||||||||| | |||| ||||||||| |||||||||||||| Sbjct 597 AATGTACATGAAATGCGGGTCGGTAGAAGCTGGTAGGAGGTTGTTTGATGAGATGCCTGT 656 Query 668 GAAGGGTTTGATTACCTGGAATGCTGTGATTTCTGGATATTCACAGAACGGGCTAGCTTA 727 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 657 GAAGGGTTTGATTACTTGGAATGCTGTGATTTCTGGATATTCACAGAACGGGCTAGCTTA 716 Query 728 CGATGTTCTGGAACTTTATGAGCAGATGAAATCATCGGGTGTTTGTCCTGATCCTTTTAC 787 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 CGATGTTCTGGAACTTTATGAGCAGATGAAATCATCGGGTGTTTGTCCTGATCCTTTTAC 776 Query 788 ATTGGTTAGTGTTTTGTCTTCTTGTGCCCATCTTGGAGCCAAGAAGATTGGTCACGAAGT 847 ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 777 ATTGGTTAGTGTTCTGTCTTCTTGTGCCCATCTTGGAGCTAAGAAGATTGGTCACGAAGT 836 Query 848 AGGGGAGTTAGTAGAAGCCAATGGTTTTGCACCAAATGTGTTTT-TAAGCAATGCATTGA 906 |||| ||||||||||| |||||||||||| ||||||||| |||| |||||||||||| || Sbjct 837 AGGGAAGTTAGTAGAATCCAATGGTTTTGTACCAAATGT-TTTTGTAAGCAATGCATCGA 895 Query 907 TTAGTATGTATGCTAGATGCGGTAACTTGGCAAAGGCACGTGCTGTTTTCGACATCATGC 966 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 896 TTAGCATGTATGCTAGATGCGGTAACTTGGCAAAGGCACGTGCTGTTTTCGACATCATGC 955 Query 967 CTGTAAAAAGCTTAGTTTCATGGACCGCCATGATAGGTTGTTATGGGATGCATGGAATGG 1026 |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 956 CTGTAAAAAGCTTAGTTTCATGGACCGCCATGATTGGTTGCTATGGGATGCATGGAATGG 1015 Query 1027 GAGAGACTGGTCTTACGCTTTTTGATGATATGATAAAAAGAGGCATAAGACCCGATGGAG 1086 |||||| ||| |||| |||||||||||||||||||||||||||||||||||| ||||| | Sbjct 1016 GAGAGATTGGGCTTATGCTTTTTGATGATATGATAAAAAGAGGCATAAGACCAGATGGGG 1075 Query 1087 CGGTGTTTGTAATGGTTTTATCTGCTTGCGGCCATTCAGGGCTAACAGATAAAGGTTTAG 1146 ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 1076 CGGTGTTTGTAATGGTTTTATCTGCTTGCAGCCATTCAGGGCTAACGGATAAAGGTTTAG 1135 Query 1147 AGTTATTTAGTGCGATGAAGAGAGAGTATAAGCTGGAGCCTGGTCCTGAACACTACTCTT 1206 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1136 AGTTATTTAGAGCGATGAAGAGAGAGTATAAGCTGGAGCCTGGTCCTGAACACTACTCTT 1195 Query 1207 GCTTAGTTGATCTACTCGGAAGAGCTGGTCGACTAGATGAAGCCATGGAGTTTATAAATT 1266 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||| | | Sbjct 1196 GTTTAGTTGATCTACTCGGAAGAGCTGGTCGGCTAGATGAAGCCATGGAGTTTATAGAGT 1255 Query 1267 CAATGCCTGTTGAACCGGACGGTGCTGTTTGGGGTGCTCTCTTGGGTGCATGTAAAATCC 1326 |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 1256 CAATGCCTGTTGAACCGGACGGTGCTGTTTGGGGTGCTCTATTGGGTGCTTGTAAAATCC 1315 Query 1327 ATAAGAATGTGGATATGGCAGAGTTAGCTTTTGCAAAGGTGATTGAGTTTGAACCCA-TG 1385 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1316 ATAAGAATGTGGATATGGCAGAGTTAGCTTTTGCAAAGGTGATTGAGTTTGAACCCAAT- 1374 Query 1386 AACATTGGCTACTATGTATTGATGTCAAATATATATTTAGACTCGAAAAACCAAGAAGGA 1445 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1375 AACATTGGCTACTATGTATTGATGTCAAATATATATTCAGACTCGAAAAACCAAGAAGGA 1434 Query 1446 ATCTGGAGAATCCGGGTAATGATGAGAGAGAGAGCATTCAGGAAAAAGCCTGGGTATAGT 1505 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1435 ATCTGGAGAATCCGGGTAATGATGAGAGAGAGAGCATTCAGGAAAAAGCCTGGGTATAGT 1494 Query 1506 TATGTGGAACACAAGGGAAAAGTTCACTTGTTTTTAGCTGGCGATAGAAGTCATGAGCAA 1565 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1495 TATGTGGAACACAAGGGAAGAGTTCACTTGTTTTTAGCTGGCGATAGAAGTCATGAGCAA 1554 Query 1566 ACAGAGGAAGTCCATAGAATGTTGGATGAGTTAGAGACTTCTGTGATGGAGCTTGCAGGA 1625 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1555 ACAGAGGAAGTCCATAGAATGTTGGATGAGTTAGAGACTTCTGTGATGGAGCTTGCGGGA 1614 Query 1626 AACATGGACTGTGATAGAGGCGAAGAGGTTTCGAGCACTACCCGTGAGCATAGCGAGAGG 1685 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1615 AACATGGACTGTGATAGAGGCGAAGAGGTTTCGAGCACTACCCGTGAGCATAGCGAGAGG 1674 Query 1686 TTAGCAATAGCTTTTGGGATTCTCAACAGTATTCCAGGCACAGAAATTCTCGTGATAAAG 1745 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1675 TTAGCAATAGCTTTTGGGATTCTCAACAGTATTCCAGGCACAGAAATTCTTGTGATAAAG 1734 Query 1746 AATTTGAGGGTTTGTGAAGATTGTCATGTGTTTATCAAGCTGGTTAGCAAGATTGTAGAT 1805 |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| Sbjct 1735 AATTTGAGGGTTTGTGAAGATTGTCATGTGTTCCTCAAGCAGGTTAGCAAGATTGTAGAT 1794 Query 1806 CGCCGGTTTGTTGTAAGAGATGCATCTCGGTTCCACTATTTCAAAGACGGGGTCTGCTCG 1865 |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1795 CGCCAGTTTGTTGTAAGGGATGCATCTCGGTTCCACTATTTCAAAGACGGGGTCTGCTCG 1854 Query 1866 TGCAAAGATTACTGGTGA 1883 |||||||||||||||||| Sbjct 1855 TGCAAAGATTACTGGTGA 1872 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 94226422965 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5