BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928873
Length=833
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11580.1 | Symbols: | AP2/B3-like transcriptional factor fa... 1312 0.0
> AT3G11580.1 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr3:3648924-3651332 REVERSE LENGTH=1106
Length=1106
Score = 1312 bits (710), Expect = 0.0
Identities = 809/853 (95%), Gaps = 21/853 (2%)
Strand=Plus/Plus
Query 1 ACTCCAAGaaa--aaaaaaaaa-aTGTCAGTCAACCATTACCACAACACTCTCTCGTTGC 57
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 39 ACTCCAAGAAACCAAAAAAAAAGATGTCAGTCAACCATTACCACAACACTCTCTCGTTGC 98
Query 58 ATCAACACCACCAAAACGACGTAGCCATAGCACAAAGAGAGTCTTTGTTCGAGAAATCAC 117
|||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 99 ATCATCACCACCAAAACGACGTAGCTATAGCACAACGAGAGTCTTTGTTCGAGAAATCAC 158
Query 118 TCACACCAAGCGACGTCGGAAAACTAAACCGCTTAGTCATACCAAAACAACACGCCGAGA 177
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 159 TCACACCAAGCGACGTCGGAAAGCTAAACCGCTTAGTCATACCAAAACAACACGCCGAGA 218
Query 178 AATACTTCCCTCTC---------AATAATAATGGC-G--GC-GACGATGACGTGGCGACG 224
|||||||||||||| |||||||||||| | || || |||||||||||||||
Sbjct 219 AATACTTCCCTCTCAATAATAATAATAATAATGGCGGCAGCGGA-GATGACGTGGCGACG 277
Query 225 ACGGAGAAAGGGATGCTTCTTAGCTTCGAGGATGAGTCAGGCAAGTGTTGGAAATTCAGA 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 ACGGAGAAAGGGATGCTTCTTAGCTTCGAGGATGAGTCAGGCAAGTGTTGGAAATTCAGA 337
Query 285 TACTCTTATTGGAACAGTAGCCAGAGCTACGTGTTGACCAAAGGATGGAGCAGGTACGTC 344
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 338 TACTCTTATTGGAACAGTAGCCAAAGCTACGTGTTGACCAAAGGATGGAGCAGGTACGTC 397
Query 345 AAAGACAAACACCTCGACGCAGGCGACGTTGTTTTCTTTCAACGTCACCGTTTTGATCTC 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 AAAGACAAACACCTCGACGCAGGCGACGTTGTTTTCTTTCAACGTCACCGTTTTGATCTC 457
Query 405 CATAGACTCTTCATTGGCTGGCGGAGACGCGGTGAAGCTTCTTCCTCTCCCGCCGTCTCC 464
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 458 CATAGACTCTTCATTGGCTGGCGGAGACGCGGTGAAGCTTCTTCCTCTCCCGCTGTCTCC 517
Query 465 GCCGTGTCTCAAGAAGCTTTAGTTAATACGACGGCGTATTGGAGCGGCTTGACCACACCT 524
| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 518 GTTGTGTCTCAAGAAGCTCTAGTTAATACGACGGCGTATTGGAGCGGCTTGACTACACCT 577
Query 525 TATCGTCAAGTACACGCGTCAACTACTTACCCTAATATTCACCAAGAGTATTCACACTAT 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 TATCGTCAAGTACACGCGTCAACTACTTACCCTAATATTCACCAAGAGTATTCACACTAT 637
Query 585 GGCGCCGTCGCTGATCAGGCTCAGTCGATACCACCGGTGGTCGCAGGGAGTTCGAGGACG 644
|||||||||| |||||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct 638 GGCGCCGTCGTTGATCATGCTCAGTCGATACCACCGGTGGTCGCAGGTAGCTCGAGGACG 697
Query 645 GTGAGGCTATTTGGCGTGAACCTTGAATGCCACGGTGATGCCGTCGAGCCACCACCACGT 704
|||||||| |||||||||||||| ||||| || ||||||||||||||||||||||| |||
Sbjct 698 GTGAGGCTTTTTGGCGTGAACCTCGAATGTCATGGTGATGCCGTCGAGCCACCACCGCGT 757
Query 705 CCGGACGGCTATAATGGCCAACACATTTACTATTACTCAACTCCTCATCCCATGAATATA 764
|| || | |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 CCTGATGTCTATAATGACCAACACATTTACTATTACTCAACTCCTCATCCCATGAATATA 817
Query 765 TCATTTGCTGGGGAAGCATTGGAGCAGGTAGGAGATGGACGAGGTTGATGAC--A--TTC 820
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 818 TCATTTGCTGGGGAAGCATTGGAGCAGGTAGGAGATGGACGAGGTTGATGACTGACATTC 877
Query 821 AAAAAGAAGTGAC 833
|||||||||||||
Sbjct 878 AAAAAGAAGTGAC 890
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40589190776
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5