BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg928875
Length=233
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11591.1 | Symbols: | unknown protein; Has 30201 Blast hits... 350 4e-96
> AT3G11591.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:3663544-3663986
REVERSE LENGTH=443
Length=443
Score = 350 bits (189), Expect = 4e-96
Identities = 214/226 (95%), Gaps = 1/226 (0%)
Strand=Plus/Plus
Query 5 GCGGTAAAAGAGAAGGATGGTGTTTTTTATGTCGTATCCGCCGACACGGCGGCAGTTAAC 64
|||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCGGTAAACGATAA-GATGGTGTTTTTTATGTCGTATCCGCCGACACGGCGGCAGTTAGT 59
Query 65 GGTGTCGGTGGGTTTTTTCGCGGCGGGCGTTTCTCTCTTCGTCGCCGGAGCGTATCTCTC 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AGTGTCGGTGGGTTTTTTCGCGGCGGGCGTTTCTCTCTTCGTCGCCGGAGCGTATCTCTC 119
Query 125 ACTCGCCAACATCGCACCTCAACAAGCTCGCGTCAAAGCTCGGAATGATTTCGTCAAGGA 184
||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 120 ACTCGCCAACATCTCACCGCAACAAGCTCGCGTCAAAGCTCGTAATGATTTCGTCAAGGA 179
Query 185 TCGAATCAGGAAATGGCTCGATGATTAGTGtttttttttCGGTCTT 230
||||||||||||||||||||| ||||||||| ||||||||| ||||
Sbjct 180 TCGAATCAGGAAATGGCTCGACGATTAGTGTCTTTTTTTCGATCTT 225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10505959541
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5